Empowering the Development of Genomics Expertise

- No need for high-level bioinformaticists at the site of sequencing.
- No need to move large datasets.
- Edge Bioinformatics enables sequencing as a solution in the biological facilities where human-resources, space, bandwidth, and time are limited
- A highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
- Allow users to address a wide range of use cases including assay validataion and the characterization of novel biological threats, clinical samples, and complex environmental samples.
Implementation
- EDGE pipeline was implemented in Perl and wraps up several existing tools within the package including a cutting-edge assembler and sequencing reads aligners.
- The User Interface was mainly implemented in JQuery Mobile, which is a HTML5-based user interface system designed to make responsive web sites and apps that are accessible on all smartphone, tablet and desktop devices.
- The current version of EDGE pipeline has been extensively tested on a Linux Server with Ubuntu 13.04 operation system and will only work on 64bit Linux environments.
- Due to the involvement of several memory/time consuming steps, it requires at least 16Gb memory and at least 8 computing CPUs. A higher computer spec is recommended: 128Gb memory and 16 computing CPUs.
Download & Updates
Please check our GitHub site LANL-Bioinformatics.
Tutorial & Help
The tutorial and guide are hosted in readthedocs.org in online or PDF version. User discussion group will be online soon.