LOCUS       NC_020099               1670 bp    ss-DNA  circular VRL 24-JAN-2013
DEFINITION  Acartia tonsa copepod circovirus isolate 154_D11, complete genome.
ACCESSION   NC_020099
VERSION     NC_020099.1
DBLINK      Project:186432
KEYWORDS    RefSeq.
SOURCE      Acartia tonsa copepod circovirus
  ORGANISM  Acartia tonsa copepod circovirus
            Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified
            Circovirus.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Dunlap,D.S., Ng,T.F., Rosario,K., Barbosa,J.G., Greco,A.M.,
            Breitbart,M. and Hewson,I.
  TITLE     Molecular and microscopic evidence of viruses in marine copepods
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 110 (4), 1375-1380 (2013)
   PUBMED   23297243
REFERENCE   2  (bases 1 to 1670)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1670)
  AUTHORS   Dunlap,D., Hewson,I. and Breitbart,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2013) College of Marine Science, University of
            South Florida, 140 7th Ave South, St Petersburg, FL 33701, USA
  REMARK    Nucleotide sequence updated by submitter
REFERENCE   4  (bases 1 to 1670)
  AUTHORS   Dunlap,D., Hewson,I. and Breitbart,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2012) College of Marine Science, University of
            South Florida, 140 7th Ave South, St Petersburg, FL 33701, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to JQ837277.
            Name: Acartia tonsa copepod circovirus AcCopCV. COMPLETENESS: full
            length.
FEATURES             Location/Qualifiers
     source          1..1670
                     /mol_type="genomic DNA"
                     /country="USA: Tampa Bay, FL"
                     /collection_date="20-Jun-2010"
                     /host="Acartia tonsa"
                     /db_xref="taxon:1168547"
                     /isolate="154_D11"
                     /organism="Acartia tonsa copepod circovirus"
     stem_loop       join(1653..1670,1..11)
                     /note="contains nonanucleotide motif 'AAGTATTAC'"
     gene            66..1121
                     /locus_tag="AtCopCV_gp1"
                     /db_xref="GeneID:14445251"
     CDS             66..1121
                     /locus_tag="AtCopCV_gp1"
                     /db_xref="GeneID:14445251"
                     /codon_start=1
                     /protein_id="YP_007353980.1"
                     /translation="MKSLHISKIEFSQWPQSIKPRAKRAVGIFSLTKMPSNATTNRAR
                     GWCFTLNNPPPEMISERRVVVPGHVSGLDAAIPTEPNLPEHRHCDYRVGQLERGDNGT
                     LHIQGYYHHRVMKSFNQMKKLIPNAHWEIAKGSPKQNRDYCTKEDTRVPDTRPFEEGE
                     CPHQGTRFDLRQCADVLANGGSLLDLPGEMVIRYHRGFSAYRSLFHKRRQEAPTVLWI
                     YGPTGSGKSRFASTLRDECYWKPPGKWFDGYDQEPLVILDDYRSEWAEWGVFGQLLRL
                     LDRYPLMVEYKGGSVQFCSELIVITCDRPPSELWFSQGDIGQLTRRISHVIHAVGMWL
                     PVEPAVHESIKRRDNIE"
                     /product="putative viral replication protein"
                     /note="putative replication-associated protein similar to
                     viral rep family (PfamPF02407)"
     gene            1129..1608
                     /locus_tag="AtCopCV_gp2"
                     /db_xref="GeneID:14445250"
     CDS             1129..1608
                     /locus_tag="AtCopCV_gp2"
                     /db_xref="GeneID:14445250"
                     /codon_start=1
                     /protein_id="YP_007353981.1"
                     /translation="MPNPHFLEPLNQAFNRAAYRLLRQAGGAATGAATTALYEYARSR
                     ARQMAYGKRSYSKGRTSYGSRYRPSYRKKRYSRKNRSSMDGASAVPPPSQSERPRQPS
                     TTCWQSRWCIRHGVMILIQVLVTWARLSGLLPILSSALTPHMHKSQAIAVRALLRTK"
                     /product="hypothetical protein"
ORIGIN      
        1 acctcggcaa catccgatca tcatatgatc aattatgact catcccgcgt ggaattatgt
       61 agccaatgaa atcgctccat atttcaaaaa ttgagttttc acagtggccg caatctataa
      121 agccgcgagc gaagcgagcg gtaggcattt tcagtttgac caaaatgcct agcaacgcaa
      181 caaccaaccg agcccgtggg tggtgcttca ccctgaacaa cccaccccca gagatgatat
      241 cagagaggcg agtggttgtc cctggccatg tcagtggact tgacgcagcc attcccactg
      301 aacccaatct accagaacac agacactgtg actaccgtgt gggtcaactg gagagaggtg
      361 acaacggcac cctccacatc caaggatact accatcacag agtgatgaag tccttcaacc
      421 agatgaagaa actgattccc aatgcgcatt gggagattgc gaagggttca cccaagcaga
      481 accgagacta ctgtaccaag gaggacaccc gagttcccga cacaagaccc tttgaagaag
      541 gtgagtgtcc acatcaaggc acacgcttcg atctgagaca gtgtgctgac gtactggcca
      601 atggtggttc tctccttgat ctccctggtg agatggtcat caggtaccac cgcggtttta
      661 gcgcgtatcg ttcgctgttt cataagcgac ggcaggaggc gcctacggtc ctctggatct
      721 acggccctac aggcagtggc aagtctcgat tcgcatcaac tctacgcgat gaatgttact
      781 ggaaaccccc tggcaaatgg tttgatggtt acgaccagga gccccttgtc atcctcgatg
      841 actacaggtc cgaatgggcc gaatggggcg tctttggaca actcctccgc ctccttgacc
      901 gctacccgct catggtcgag tacaagggag gatccgtcca gttctgtagt gaacttattg
      961 tcatcacgtg tgaccgcccc ccgtccgaac tgtggttctc ccagggagac ataggacagc
     1021 taacccggcg gatcagtcac gtcatccacg ctgtaggcat gtggctcccc gtggagccgg
     1081 ccgtgcatga aagtataaaa aggagagata acatagaata aaatacaaat gccaaatcca
     1141 cacttccttg aacctcttaa ccaggccttc aacagagcgg cctacagact attgagacaa
     1201 gcaggcggcg cggctacagg cgctgcaact actgcccttt acgaatacgc aagatctcgt
     1261 gcacgacaga tggcttatgg aaaacgcagt tactcaaagg gcagaacctc ctatggttcc
     1321 agatacagac cctcctacag gaagaagcga tactctcgca agaaccgctc aagtatggac
     1381 ggcgcaagcg ccgtaccacc accaagtcaa tccgaaagac caagacaacc aagtacgacc
     1441 tgttggcaaa gcaggtggtg catacgtcat ggagtgatga tactaatcca ggtactggtg
     1501 acatgggcga gactttctgg acttcttcca atcctctctt cggccttaac accccacatg
     1561 cacaaatcac aggccattgc agttcgagcg ctacttcgta cgaagtagcg ctcgaactgg
     1621 aacagttaaa taaacccgat tcggataact agttgccgag cataagtatt
//