LOCUS NC_035216 4052 bp RNA linear VRL 14-JUL-2017 DEFINITION Aedes camptorhynchus reo-like virus strain mos182CP78499 segment 2, complete genome. ACCESSION NC_035216 VERSION NC_035216.1 DBSOURCE BioProject accession PRJNA394309 KEYWORDS RefSeq. SOURCE Aedes camptorhynchus reo-like virus ORGANISM Aedes camptorhynchus reo-like virus Viruses; unclassified viruses. REFERENCE 1 (bases 1 to 4052) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.S., Imrie,A. and Holmes,E.C. TITLE High Resolution Meta-Transcriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia JOURNAL J. Virol. (2017) In press PUBMED 28637756 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 4052) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-JUL-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4052) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.-S., Imrie,A. and Holmes,E.C. TITLE Direct Submission JOURNAL Submitted (30-MAY-2017) Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Charles Perkins Centre, Sydney, NSW 2006, Australia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to MF176285. ##Assembly-Data-START## Assembly Method :: Trinity v. 2.1.1 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4052 /mol_type="genomic RNA" /country="Australia: Leshenault Peninsula" /segment="2" /collection_date="15-Sep-2015" /host="Aedes camptorhynchus" /db_xref="taxon:2010269" /strain="mos182CP78499" /organism="Aedes camptorhynchus reo-like virus" gene 8..4021 /locus_tag="CGU98_s2gp1" /db_xref="GeneID:33350110" CDS 8..4021 /locus_tag="CGU98_s2gp1" /db_xref="GeneID:33350110" /codon_start=1 /protein_id="YP_009389539.1" /translation="MSYVLDATQRLQVEDTINDSTTSDVSNIRNQLYRILSDNIDLHN IVDDYQNLSFKRSNFKQPECDDYNPIGNGAICLKDGTIDSLYYVLAQYGKELEKIKNE YLKLSFDYDDVPTRHQFDARIGDLDERFKQLNLKITLNIPEIYALREHVSLSILQNTA LQTALASEREERIALQNTIERHTVEFRESLLIHTDNLRRLIDTNLNLMYDMTSKVDNL TKCSDKFEEKLSIIDNRVKGLEQVSDSENLSGKIDDLITKTTELGKSVKGFEEANALL LNVTTEIANIKDDIKTKTQSRDKKIAALRDVIYMTSYTARHALSATFSLFIPCDISSN YLNSNDSHAAYSIIYNCNNACEIVGLVHNTSEVFSILVSPSMKITVTFPHSTENNFIC EPGVWNDTTQHVNIPLVVITVNGHLSDPSVVMESTSYLSIYVMNGARSLSDEIIPYEI HKVENLSMPINIRNGVLSIRPTKFLARKVYYTRSNSSIIDVYGSVDSAVHHIARSNLT DLLLTPYEFPTESIQTPIGEMTNDIEMLKRTTVRSRYGTIRFGSNPDAYIHLNIIPEV KNILKPYMLTQRYPVTSGDRLGLARKWSLSVKTPRLPQSTEVVTPCTFTYDGEEESVL SMAVVTSVEISATTQNAVGWLSASPDSRPWYDHIVPNFSKFKDECSNSSVSSYAAVLG INTPSIATGIVIGGANTGFKLTVRIPMGIALPGVAVATDSTKLNLISNGVIITEATMS WRAVNVVKQGSQHVELYGEVDLLSSISEHNISVLVLLGQISFTGWNSLKIIYKSQGVG VSSPTLKATNGSIRYTSLPRNDGNCIKWDENLINVEVLDYSNIDIYSDYVNKKDEYQN LIVMDSKGLHYRGWPVSLQLINPELRCGILQDPIGLGNLSIIDYDKIKSEEQIQSLAV SVLNVSQMVNDQERRIALIERSFTTTSPTTIESIITTIVSVGSIVAPYLGALANVTFQ LLAVNMRISDMLSRGINHTTLMNIMYEFYLTISVIRVIRGDQNRLSDINRKIYDISKV ATSEITKRFNALRSINTTPTTNQAVNVNVRLPSGIKLLVKETPDKIAHDVEHIVRPLD GMKLAGNSFKSLAEKIETGKASQLEKTVFHKMRDIHLLPMHNYLKFVSYSSTHKHIDI LGVSDGYAANYGSKVSTHLLGNNKFQALKIKSDGSGGLGAWRMKLEKTDGDWKLVNPA SSGMTNYEILCAAGISHKQAVDMIGKSSKENLDKMVSWAYEAKSKEYLQAEQHYSVSK KNIMLLPGQFDAVHDAIRSSAGAYNYTLVRNNCQKFTDDILKLLTNTAFKPKWMSGST HQNYVNSLENLLSTSVA" /product="putative RNA-binding protein" ORIGIN 1 gttgaagatg tcctatgtac tggacgccac gcaacgacta caagtcgaag atacaattaa 61 cgactcaact acttctgatg tgtctaacat acgcaatcaa ttataccgaa tactctctga 121 taatatagat ttacataaca tagtagatga ttatcaaaat ctatccttta aaagatcaaa 181 ttttaaacaa cctgaatgtg atgattataa tcctatcgga aatggagcga tatgtcttaa 241 agacggtacg attgattctt tgtattacgt tcttgcgcaa tatggaaaag agttagaaaa 301 gataaagaat gaatatctca aactttcgtt tgattatgat gacgtcccta ctcgccatca 361 attcgatgca aggattggtg atcttgatga gcgttttaaa caattaaatt tgaaaattac 421 acttaacatt ccagaaatat atgctttgag agaacatgtt tcactctcaa tcctgcagaa 481 tactgcacta cagactgctc tcgcctcaga acgtgaagag agaattgcat tacagaatac 541 tattgaacga catacggttg aatttcgtga atcactactc attcacactg ataatttacg 601 tagattgatc gatactaatc taaacttgat gtacgacatg acttcaaaag ttgataattt 661 aacgaaatgt tccgataaat tcgaagagaa attatctata attgacaacc gagtaaaagg 721 attagagcaa gtttctgatt cagaaaattt gtctggaaag attgacgacc tgattacgaa 781 gacgaccgag ttaggaaagt cggtgaaagg gtttgaggag gctaacgcct tacttctaaa 841 tgttacaact gagattgcta atataaaaga cgatataaaa actaaaacac aatcacgaga 901 taaaaagata gcggctttac gtgatgtcat ttatatgacc tcgtatacag ctcgtcatgc 961 tttgtcagct accttttcgc tttttatccc gtgtgatatt tcctcaaact atttgaattc 1021 aaatgattca cacgcagcgt acagtattat ctataactgt aataatgcat gtgaaatcgt 1081 tggattagtc cacaatacaa gtgaagtgtt ttcaattttg gtttctccat cgatgaaaat 1141 cactgttaca tttccccatt ctaccgagaa taattttata tgcgaacccg gcgtgtggaa 1201 tgatactact cagcacgtta atatcccact agtggtaatt actgtgaatg gacacttatc 1261 tgatccatcc gtcgtaatgg aatctacgtc ttatttatca atctacgtca tgaatggtgc 1321 tagatcacta tcagacgaga taattcctta tgaaattcac aaagtagaga atttatcaat 1381 gcctattaat atacgtaatg gtgtactctc tattcgacca acgaagtttt tagctagaaa 1441 agtgtattat acacgttcaa attcatctat aattgacgtt tatggatccg tagattcggc 1501 cgtgcaccat atagcccgtt cgaatttaac agatctactt ctaactccat atgagtttcc 1561 tacagaatct attcaaactc cgataggaga aatgactaat gacattgaaa tgctaaaacg 1621 tactacagta cgtagtcgtt atggtacgat tcgtttcgga tctaatccgg atgcatatat 1681 acatttaaac atcatacccg aggtaaagaa tattttaaaa ccatacatgc tcactcagcg 1741 atacccggta acatctggag atagacttgg actggccagg aaatggtcat taagtgtaaa 1801 gactcctagg ttaccgcaat ccactgaggt tgtgactccc tgtaccttca cgtatgatgg 1861 tgaagaagaa tcagttttat caatggcagt ggttacgtca gttgaaattt ccgctacaac 1921 ccaaaatgca gtcggatggc tttccgctag tcctgattca agaccgtggt atgatcatat 1981 tgtaccaaat ttttcgaaat tcaaagatga atgttcgaat agctcagtat catcgtatgc 2041 tgcagttcta ggtatcaata ccccgtctat tgccactgga attgtgatcg gtggtgctaa 2101 cacggggttt aaacttacag tccgtatacc catggggata gccctacccg gagttgcggt 2161 agctaccgat tcaactaaat taaatttaat aagtaatggt gtcatcatca ccgaagccac 2221 tatgtcatgg cgggctgtaa atgtagtgaa acaaggctct caacatgtgg agttgtatgg 2281 ggaagttgac ttactatctt ctatttcaga gcataacatt tcagttttag ttttgttagg 2341 acaaatttca ttcactgggt ggaatagtct taaaattata tataaatcac aaggggttgg 2401 agtttcatcc ccgacactta aggccactaa tggttcgatc cgttatacca gtcttcctag 2461 aaatgatggt aactgcataa aatgggatga gaatctcata aatgttgaag tactcgatta 2521 ttcaaatatc gacatatatt cagattatgt caacaagaag gatgaatatc aaaatcttat 2581 agtgatggat tcaaaagggc tacattacag aggttggcca gtttcattgc aattaataaa 2641 tcccgagctc aggtgtggta tattacaaga tccgatagga ttaggtaatt tatcaattat 2701 tgactatgat aaaattaaat cagaagagca aatccaatca cttgctgtaa gtgtattgaa 2761 tgtttcacaa atggtcaacg atcaagaacg acgtatcgca ttgatcgaaa gaagttttac 2821 aaccacctct cctaccacga ttgagagtat cattaccact atagtgtcgg ttggaagcat 2881 cgttgctcct tatcttggtg ctttagctaa cgtaacattc caattattag ccgtaaatat 2941 gcgtatcagt gatatgcttt ctagaggcat taatcacact actcttatga atataatgta 3001 tgagttctat ttaacaattt cagttattag agtcatacgt ggtgatcaga acagacttag 3061 tgatataaat agaaagatat atgatatttc taaagtagcc acgtcagaaa ttactaaaag 3121 atttaatgcc ctacgatcta taaataccac tccaacgacc aatcaggcgg ttaacgttaa 3181 tgtacgcctt ccgtctggaa ttaaattgtt agttaaagaa actcccgata aaatagctca 3241 tgatgttgag catatagtaa ggccacttga tggcatgaaa ttagctggga attccttcaa 3301 gagtttagct gagaaaatag agacggggaa agcttcacaa ctcgagaaga ccgtatttca 3361 taaaatgcgt gatattcatt tactcccaat gcataattat ttaaaattcg taagttactc 3421 ttccactcat aaacatattg atatacttgg tgtctctgac gggtatgccg ctaattatgg 3481 atcaaaagtg tccacacatt tactaggaaa caataaattt caagctttaa agatcaagtc 3541 tgatggtagt ggcgggcttg gagcttggcg tatgaaactt gagaaaaccg atggagactg 3601 gaaactagtg aatccagctt ccagtggcat gactaattat gaaatattat gtgcagctgg 3661 catatcacac aaacaagctg tggatatgat cggcaaatca tcaaaggaaa atttagataa 3721 aatggtctca tgggcttatg aagctaaaag taaagaatat ttacaagctg aacaacatta 3781 cagtgtctca aaaaagaata tcatgttatt accggggcag tttgacgccg ttcatgacgc 3841 aatcagatcc tcggctggag cttataatta tactttagta agaaataact gtcagaaatt 3901 tactgatgac attctaaagt tattgactaa tacagccttt aaaccgaaat ggatgagtgg 3961 gagcactcac cagaattatg ttaattcact agaaaatttg ttgtctacca gcgtggcgta 4021 atcttcacat agctgcatat gcgtatgcag ac //