LOCUS NC_035217 2555 bp RNA linear VRL 14-JUL-2017 DEFINITION Aedes camptorhynchus reo-like virus strain mos182CP78499 segment 4, complete genome. ACCESSION NC_035217 VERSION NC_035217.1 DBSOURCE BioProject accession PRJNA394309 KEYWORDS RefSeq. SOURCE Aedes camptorhynchus reo-like virus ORGANISM Aedes camptorhynchus reo-like virus Viruses; unclassified viruses. REFERENCE 1 (bases 1 to 2555) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.S., Imrie,A. and Holmes,E.C. TITLE High Resolution Meta-Transcriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia JOURNAL J. Virol. (2017) In press PUBMED 28637756 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2555) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-JUL-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2555) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.-S., Imrie,A. and Holmes,E.C. TITLE Direct Submission JOURNAL Submitted (30-MAY-2017) Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Charles Perkins Centre, Sydney, NSW 2006, Australia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to MF176287. ##Assembly-Data-START## Assembly Method :: Trinity v. 2.1.1 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2555 /mol_type="genomic RNA" /country="Australia: Leshenault Peninsula" /segment="4" /collection_date="15-Sep-2015" /host="Aedes camptorhynchus" /db_xref="taxon:2010269" /strain="mos182CP78499" /organism="Aedes camptorhynchus reo-like virus" gene 6..2444 /locus_tag="CGU98_s4gp1" /db_xref="GeneID:33350112" CDS 6..2444 /locus_tag="CGU98_s4gp1" /db_xref="GeneID:33350112" /codon_start=1 /protein_id="YP_009389540.1" /translation="MSTVVQEIPRNEYLNGKEIITAIFSCKRRRSGHVIVVGYDERTL LRWKYQISASVGAKVAYARVRHATDTEELSHAVRELTPNLLNDTCVLMLYGDHLTISL DFARKLSASIRAGLLYLPQSSASSLEEQCMMLRNNLPDPTIPVFGVLTPTNLERSISP ELKAEFRDNLAVSQCARELTIAFQVFRYRQESRALNSIKTKDNTDVIVNIVGYTPTLV HATLRSGARPVFYDPAFPKFTDLICPPLTTLLTADHLRRKKDSGWVWVRTNPQKKIAL TAYLGLSLATQVLYIGSFPGTNLLDLQLTGHNLILIDPAIDDQYRLRMMKVCPNVSFK QEKYDFTVDHFNSLIQNRFDTSRDIVILNDAWIEGEAYELFQRNAFDHFSELCSRFGN VTIISKFHLLTDYKLTKVKALLPQPHGGSTNEMRIIFGGDGKDYHYRSNKVNLYMEDF KSLNLTTQLWCINFYYHYLVKREDILKIDPGYNNIYSCLFSLSNDMNRKKDVLKWLSH ANLNHNSVIFTTPNRDRAKVLVDSNFNPRTNISIKKDLFTFNSPVREIPWKDVCYTPS EMSEVLMECVTLEAFSGTMGKFYTGAGCYTQSSTFDLYDIYVSHYVIRPCTQVQHVGT SPLGFVKAFTHLFLKHGGMRRQAYYTNRGILLRRFFVSMNVPSTAYRLVGTEKCTMQI LERIVLTSKYGIVRIFPNTEVNLSGHLLAMFVAAHFVSVSFEMWIRQLIHMATDVPSH EIDIMGNSPLEFFDNVRNGTTYLHWHTINELILTAEIVPEYVSSVMMGRHSESVISTH LKHFQDILLPIMRA" /product="putative minor core protein" ORIGIN 1 agaagatgtc aaccgtcgtg caggaaattc ctaggaatga atacttaaat ggaaaggaaa 61 tcataaccgc aattttttcg tgtaagcgga gaagatccgg tcacgtaata gttgtcggat 121 atgatgaacg taccttatta cgttggaaat accaaatatc ggcttcggtc ggagcgaaag 181 tggcttatgc gagagttagg catgccaccg acactgaaga actctctcat gcagttagag 241 aactaactcc aaatttgcta aatgacacat gcgtactaat gttgtacgga gatcatctga 301 ctatatctct tgatttcgca cgtaaactgt cagcttcaat tcgagctgga ctcttatact 361 taccacagtc atctgcatct tcattggaag agcagtgtat gatgttacga aataatttac 421 ctgatccgac tattccagtg tttggtgtgt tgactccaac taacttagag cgatcgatat 481 caccagagct gaaagcagaa tttcgcgata atttggcggt ttctcaatgc gctagagaat 541 tgacaattgc attccaagtg tttagatatc ggcaagaaag tcgagctcta aactctataa 601 aaacgaaaga taataccgat gttattgtta acatcgttgg gtatactccc actttagtcc 661 acgcaacatt acggagtggc gctagaccag ttttttatga tccagcattt ccaaaattca 721 ctgatttaat ttgtccaccc ttaaccacat tattaaccgc agatcaccta agaaggaaga 781 aagattccgg atgggtgtgg gtgcgaacca atcctcaaaa gaaaatagca ttgactgctt 841 atcttggtct gtcattagct actcaagtgt tatacattgg aagttttcct ggcactaatc 901 tactcgactt acaattaact gggcataacc tgatattgat cgatccagcg atagatgatc 961 aataccgtct tcggatgatg aaagtgtgtc ccaacgtttc gtttaaacaa gagaaatacg 1021 attttacagt tgatcatttc aactcactaa ttcaaaacag attcgataca tcgcgtgata 1081 ttgtcattct caatgatgca tggattgagg gtgaagctta cgaattattt caaagaaatg 1141 ctttcgatca tttcagtgaa ctatgcagtc ggttcggaaa tgtcaccatt atttcaaaat 1201 ttcatctact tactgattat aagcttacaa aagtcaaagc tttattaccc caaccgcatg 1261 gggggtcaac aaatgagatg cgtataatat ttgggggtga tggtaaagac tatcactatc 1321 gttctaataa agttaattta tatatggaag atttcaaatc gttaaactta accacgcaat 1381 tgtggtgcat taacttctac tatcattatc ttgtaaaacg cgaggatatt ttaaaaattg 1441 atcccggtta taataatatt tactcttgtc tgttttcttt aagtaacgac atgaatagga 1501 aaaaagatgt actaaaatgg ttgtcacatg cgaacttaaa ccataatagc gtgatattta 1561 ctactccgaa tcgagacaga gcgaaggttc ttgtagattc aaattttaat ccccggacta 1621 acatatccat taaaaaagat ttatttacat ttaactctcc cgtgcgtgaa ataccctgga 1681 aagatgtgtg ttatactcca agtgaaatgt cagaagttct aatggaatgc gttacgcttg 1741 aggcgttcag cggtaccatg ggaaaatttt ataccggcgc cggatgttat actcaatcct 1801 ccacttttga tttatatgac atatatgtct cacattatgt aataagacct tgtacacaag 1861 tacagcatgt aggaacctca ccattaggtt tcgtcaaagc gtttacccat ttatttctca 1921 agcatggcgg catgcgccgt caggcatatt atactaatag aggtattttg ttacgtagat 1981 tcttcgtatc aatgaatgta ccttcaaccg cttatcgctt ggttggtaca gaaaaatgta 2041 ccatgcagat tttagaacga atcgtactaa cctccaaata tggaatagtt cgtattttcc 2101 cgaatactga agtgaactta tctggacatc tgttagctat gtttgtggcc gcacatttcg 2161 tatctgtgtc atttgaaatg tggatcaggc aactcattca catggctaca gacgttcctt 2221 cacatgaaat tgatataatg gggaattcac ccttagagtt ctttgataac gtaagaaatg 2281 gtaccactta tttacattgg cataccatta atgagctcat actgacagct gagatcgtac 2341 ctgaatacgt atcatcagtc atgatgggac gacatagtga gtccgttata tcgacccatc 2401 taaaacactt tcaggacatt ctgttaccta ttatgcgcgc gtaggcattt tgcacgtcca 2461 taattattaa aactgcacgg ttgccatcaa tattagctta gaggtgggta ccagccttac 2521 acggcttcca gattcagtat tatatattca gcatt //