LOCUS NC_035223 3160 bp RNA linear VRL 14-JUL-2017 DEFINITION Aedes camptorhynchus reo-like virus strain mos182CP78499 segment 3, complete genome. ACCESSION NC_035223 VERSION NC_035223.1 DBSOURCE BioProject accession PRJNA394309 KEYWORDS RefSeq. SOURCE Aedes camptorhynchus reo-like virus ORGANISM Aedes camptorhynchus reo-like virus Viruses; unclassified viruses. REFERENCE 1 (bases 1 to 3160) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.S., Imrie,A. and Holmes,E.C. TITLE High Resolution Meta-Transcriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia JOURNAL J. Virol. (2017) In press PUBMED 28637756 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3160) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-JUL-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3160) AUTHORS Shi,M., Neville,P., Nicholson,J., Eden,J.-S., Imrie,A. and Holmes,E.C. TITLE Direct Submission JOURNAL Submitted (30-MAY-2017) Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Charles Perkins Centre, Sydney, NSW 2006, Australia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to MF176286. ##Assembly-Data-START## Assembly Method :: Trinity v. 2.1.1 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3160 /mol_type="genomic RNA" /country="Australia: Leshenault Peninsula" /segment="3" /collection_date="15-Sep-2015" /host="Aedes camptorhynchus" /db_xref="taxon:2010269" /strain="mos182CP78499" /organism="Aedes camptorhynchus reo-like virus" gene 17..3028 /locus_tag="CGU98_s3gp1" /db_xref="GeneID:33350126" CDS 17..3028 /locus_tag="CGU98_s3gp1" /db_xref="GeneID:33350126" /codon_start=1 /protein_id="YP_009389548.1" /translation="MEGGDVPTRNLEVLSSEERIRSATSSALSSVRFFTLERENRSVL IYSQVPAPVNTTSYLLKFTQKKIGEMSPLVDIRLINTLDLTRPGSEPVACCILDLTPD ASGVIYDDFYAFSDEKFDIVRTWIIAAKILRKYGNVIYLRPDTVTVNDTVVVDRIELA QFRFRNLIAIGETIKNPSERLDYMNSLKGRFVETMNEGVPDYEARYTNSCRYGSEDTN FVTAKIPIFDVEKHMIESANSHFGQLYMHPMKLIDSYRDLETEITRISPDTRMRAAGA NRNIRVPGPLIYTVDVAEYYQSLMSIKELHMQLDSMVVVSMMLGNMATEISTLQQSLR VSSGVSSGADVINPCINTGKLSMLIDTIFRVNINPNIFQVDILDVHIQMWSSPIQFIA LKFFLSMIPAPVITAQQRRKINNITIAHILHAFLTPVQFQTLANRIRDESRGIELPDV ASMNCWSRSHIDLMQTVYYYGITVLNSSSKAFSDVRTLITMWFNDTSHMINNTKIHLP GGGVEEMSLCTPYYTGKSPLAYARDTEFDSFRLARHMKPNGVLLMNSQTDYMEFGDSS VLTRIIKFATTYFSQIRNLGLSPSQLSTILTYVEQRSVERILMIPRVFNVMRGTFSTS IAADGFIRNVPLSHKSYLKVDSRFMITGMMMIDAGAELRLDATVRMYGGTHVAYTMQI FKSLYKEISIRCGLSLGSDVTQKQLILVTTSLMKIFFETPEFDPKEMFGYEDAGQWRR FLEGDYVPISEIPVLDNFFQLIGRIEPLLRSEYLHERIVRRFFLTYGAYSKGQGPVMA VNTVPRNRLDIIHTITSINDYENLISTAYTTGEEWGTEFDNLWYNKMSKVDPVTQMSS DPSKNKIPAIRVLANARVTLDILLEDGSFTTGSAGPGSTIADFENYMGSIVKDIRRSR MLNIKHTVILNDIGSHNRPEPMPVAKRRDSLLSRLPSLCMVVPYKDLELRTASPIDLL DRLNNQVTFRRDAYEMWHDFKIEITRANRVF" /product="putative major core protein" ORIGIN 1 tcagactgaa ataaaaatgg aaggaggtga tgtcccaacg cgcaatcttg aggttctctc 61 aagtgaagaa agaattagaa gtgcgacaag ttctgctcta tcttcggttc gtttctttac 121 cttagagaga gaaaatcgtt ctgtactgat ttattctcag gttccagcgc ctgttaatac 181 tacatcatat ttgctgaaat ttactcagaa gaaaattggg gagatgagtc ctctagtaga 241 cattcgtctt atcaacactc tagatttaac tcgccccggc tcagagccgg ttgcgtgctg 301 catacttgat ctgactccgg acgcatcagg agttatttat gatgactttt acgcattctc 361 ggacgagaag ttcgacatag tacgcacttg gattattgcg gctaaaattt tacgcaaata 421 tggaaacgtc atttatctaa gaccagatac agttacggtt aatgataccg tagttgtaga 481 ccgtattgaa ttggctcaat tccgattcag aaacttaatt gcaataggtg aaaccattaa 541 gaacccgtct gaaaggcttg attatatgaa ttctttaaaa ggacgttttg ttgagacgat 601 gaacgaaggc gttcctgatt atgaagcacg ttataccaat tcctgtcgat acggttctga 661 agatacgaac tttgttaccg ctaaaattcc aatctttgac gttgaaaagc atatgatcga 721 gagtgctaac agccacttcg gtcaattata tatgcatccc atgaaattaa ttgatagtta 781 ccgtgatctt gaaactgaga tcactcgtat ttcacccgat acgcgtatgc gagctgcagg 841 agccaatcgt aacattcgag ttcctggtcc actaatatac accgttgatg tagcggaata 901 ttaccaatca ttaatgtcta ttaaagaatt gcacatgcaa ttagattcta tggtcgtggt 961 ctctatgatg ttagggaaca tggctactga aatttctaca ttacaacaat cactaagagt 1021 atcatctggc gtaagttcag gtgctgacgt gatcaaccct tgtataaata ctggaaaatt 1081 atctatgcta attgatacaa tcttccgcgt taatataaat ccgaatatat ttcaagtaga 1141 catattagac gtgcatatcc agatgtggtc ttcccccatc cagtttattg cactgaagtt 1201 tttcttatct atgatacccg cacctgttat tacagcgcaa cagcgacgaa agattaataa 1261 cattacaatt gctcacatat tacacgcttt tctgacgcca gtacaatttc aaactcttgc 1321 aaatagaatt cgagatgaga gtcgaggaat cgagctccct gatgtggctt cgatgaattg 1381 ctggtctagg tcccatattg atctaatgca gacagtctat tattatggta ttactgtcct 1441 aaattctagt tccaaagctt ttagcgatgt cagaaccttg attactatgt ggtttaacga 1501 tacgtcacat atgatcaata acactaagat acatttacca ggcgggggcg tcgaagagat 1561 gtctctgtgt actccatatt atacggggaa atcccctctg gcttacgccc gtgatacgga 1621 atttgattcc ttcagactag caagacatat gaagccaaat ggcgtgctcc taatgaacag 1681 tcagactgat tatatggagt ttggtgattc aagtgtcctt acacgcatta ttaaatttgc 1741 cacaacgtat ttttcacaaa ttaggaatct ggggttatca ccatcccaat tatcgacgat 1801 actaacgtac gttgagcaac gaagtgttga acgtatactc atgatcccac gagtatttaa 1861 cgtaatgagg ggaaccttca gtaccagtat tgccgcagat ggtttcatac gtaacgtacc 1921 cctatcacat aaaagttatt taaaagtaga cagcagattc atgattactg gcatgatgat 1981 gattgatgca ggggctgaac ttagattaga tgctacggtt cgtatgtatg ggggaactca 2041 cgttgcatat accatgcaaa ttttcaaatc tttgtacaaa gaaatatcta tcagatgtgg 2101 tcttagctta ggctcagacg tcactcagaa gcaattaatt ctcgtcacta catcattaat 2161 gaaaatattt ttcgaaaccc cagagtttga tccgaaagaa atgttcggct atgaggatgc 2221 tgggcaatgg agaagattcc ttgagggaga ttacgttcca atatcagaaa ttccagtgct 2281 tgacaacttc ttccaactta tcggacgaat cgagccttta ctacgaagtg aatatctaca 2341 cgaacgtatc gtacgtagat ttttcctaac ttatggagca tattcaaaag gtcaaggtcc 2401 tgtaatggcc gtaaatacgg ttcctaggaa ccgattagat ataattcaca cgattacgtc 2461 aattaatgac tacgaaaacc tgatttcgac ggcttacacc actggggaag agtggggtac 2521 cgaattcgac aatttatggt ataataaaat gtcaaaagta gatcctgtga ctcaaatgtc 2581 cagtgatcct tcgaaaaata agataccagc gatacgtgta ttggctaatg ccagagttac 2641 attggatata ctattggaag acggttcatt tactacagga tcggctggcc caggaagtac 2701 aatagccgat tttgaaaatt atatgggcag tatagttaaa gatatacgtc gatcacgtat 2761 gttaaatata aagcatacag tcatccttaa tgacattggt tctcataatc gtccggaacc 2821 catgccagtg gccaaacggc gtgattcatt attatcacga cttccatctt tatgtatggt 2881 cgtaccttat aaagacttgg agttgcgcac cgcttctcca attgatttac ttgacagatt 2941 aaataatcaa gtcacatttc gtagagatgc ttatgagatg tggcatgatt tcaagattga 3001 aattacaaga gctaataggg tgttttaaat gccttataaa ttcgtggtac ttgatactaa 3061 tttgaacgat ctctgatgcc aattagaagc gctttgagga aatatcttct ggaaacgatt 3121 atatggatag cctatgggtc catatatggt aaccttttac //