LOCUS HM468428 2790 bp DNA circular VRL 28-AUG-2012 DEFINITION African cassava mosaic virus strain Pakistan/Multan/Tomentosum/08, complete genome. ACCESSION HM468428 VERSION HM468428.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2790) AUTHORS Nawaz-Ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M. TITLE A melting pot of old world begomoviruses and their satellites infecting a collection of gossypium species in pakistan JOURNAL PLoS ONE 7 (8), E40050 (2012) PUBMED 22899988 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2790) AUTHORS Nawaz-ul-Rehman,M.S. and Fauquet,C.M. TITLE Direct Submission JOURNAL Submitted (08-JUN-2010) ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO 63132, USA FEATURES Location/Qualifiers source 1..2790 /mol_type="genomic DNA" /country="Pakistan" /collected_by="M S Nawaz-ul-Rehman" /collection_date="Apr-2008" /host="Gossypium tomentosum" /db_xref="taxon:10817" /strain="Pakistan/Multan/Tomentosum/08" /organism="African cassava mosaic virus" gene 136..477 /gene="AV2" CDS 136..477 /codon_start=1 /protein_id="AEI17656.1" /gene="AV2" /translation="MWDPLVNESPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="AV2" gene 296..1075 /gene="AV1" CDS 296..1075 /codon_start=1 /protein_id="AEI17657.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCERPMSRSSRLSRGMMLSTLVSVSDYVMCTRGPR LTRRVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRERRPYGNTPQDFGQIFN MTDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQE AGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="coat protein" gene complement(1072..1476) /gene="REn" CDS complement(1072..1476) /codon_start=1 /protein_id="AEI17658.1" /gene="REn" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI NHVIRAADHVLFNVIEKTIACQLTHEIKFNIY" /product="replication enhancer protein" gene complement(1217..1624) /gene="TrAP" CDS complement(1217..1624) /codon_start=1 /protein_id="AEI17659.1" /gene="TrAP" /translation="MQSSSPPQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcriptional activator protein" gene complement(1533..2615) /gene="AC1" CDS complement(1533..2615) /codon_start=1 /protein_id="AEI17660.1" /gene="AC1" /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLDSLSHLTLSS LKSVESCIRMGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSS HTWIRTATPSNGDNFRSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGNYSQRTLY FSFIISNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSI VIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDGVDPHYLKHFKEFM GSQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIF ITPTEPLYSGSNQSQSQTIQEASHPA" /product="replication-associated protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 61 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 121 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ctcctgactc ggtgcatggg 181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 241 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 481 cccagacata cccaggggct gtgaaaggcc catgtcaagg tccagtcgtt tgagcagagg 541 gatgatgtta agcaccttgg tatctgtaag tgattacgtg atgtgcacac gtgggcctag 601 gctgacacgc agggtcggaa agaggttttg tatcaagtcc gtttacattc ttggtaagat 661 ctggatggat gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct 721 tagggaaaga aggccttatg gcaatacgcc ccaagacttt gggcagatat ttaacatgac 781 tgataatgag cccagtactg caacaattaa gaacgatttg agggataggt ttcaggtgtt 841 gaggaaattt catgccactg ttattggtgg tccatctggc atgaaggagc aggctttggt 901 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg cagggaagta 961 tgagaatcac acagagaatg cgttgctttt gtacatggca tgtactcatg cctccaatcc 1021 tgtatatgct acgttgaaaa tacgtatata tttctatgac agtattggca attaataaat 1081 attgaatttt atttcatgag tcaactgaca cgcaatagtt ttttcaatta cattgaacaa 1141 aacatgatca gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta 1201 tttaagtact tggtatctaa agacccttaa gaaaagacca gtctgaggct gtaaggtcgt 1261 ccagatcctg aagttgagaa aacatttgtg aatccccagc tccttccgca ggttgtgatt 1321 gaatcgaacc tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgcct 1381 ggttattgtg aaatacaggg gattgtttat ttcccaggta tacacgccat tcattgcttg 1441 aggagcagtg atgagttccc ctgtgcgtaa atccatgatt ggagcagttg atatggaggt 1501 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt 1561 gtctgtgact gactttgatt ggaacctgag tagagtggtt ctgtgggggt gatgaagatt 1621 gcattcttta atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta 1681 taggacgagg ttggtcctgg attgcagagg aagatagtgg gaatgccacc tttaatttga 1741 acgggtttcc cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta 1801 aagtgcttta ggtagtgtgg atcgacgcca tcaatgacgt tgtaccaagc agcattattg 1861 aagacctttg gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg 1921 gcccatatcg tcttccctgt tctgctatca ccttctatga caatactatt gggtctccat 1981 ggccgcgcag cggaagccct aacattatca gcgacccatt cttcaagttc atcaggaact 2041 tggtcaaagg aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc 2101 ctttctaaat tactatttga gattatgaaa ctgaagtaca aagtcctttg ggagtaattc 2161 cctaatgaca ttaagagctt ctgacttact gccgctgtta agcgctttgg cgtaagcatc 2221 atttgcggac tgttgaccgc ctctagcaga tcgtccatcg atctgaaatt gtccccattc 2281 gacggtgtcg ccgtccttat ccaggtatga cttgacatct gagcttgatt tggcaccttg 2341 aatgttgggg tggaaactgg tgctacagct tgggtgtaga caatcgaaga gacgattgtt 2401 cgtaatcgtg attttgccct cgaattggat gagggcatgc aagtgaggtt ccccattctg 2461 atgcagctct ctacagattt taatgaactt agggttagat gggagagaga gtctagagtt 2521 tgaatgaatg acagcaggtg ttctttgggg atagaacact ttgggtatgt gagaaagaca 2581 ttcttggctt gaactctaaa acgaggagtc ctcattttga ccaagtcaat tggagacact 2641 caactagaga cactcttgag catctcctcc tgttaattgg agacattata taggtgtctc 2701 taaatggcat tcttgtaata agttaaactt taatttgaat gaaaagcctc aaaaggcgca 2761 taacacccaa ggggccaacc gtataatatt //