LOCUS       GQ204107                2784 bp    DNA     circular VRL 28-AUG-2012
DEFINITION  African cassava mosaic virus clone ACMV/PK/Mul/Har/08 segment
            DNA-A, complete sequence.
ACCESSION   GQ204107
VERSION     GQ204107.1
KEYWORDS    .
SOURCE      African cassava mosaic virus
  ORGANISM  African cassava mosaic virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Nawaz-Ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M.
  TITLE     A melting pot of old world begomoviruses and their satellites
            infecting a collection of gossypium species in pakistan
  JOURNAL   PLoS ONE 7 (8), E40050 (2012)
   PUBMED   22899988
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Nawaz-ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2009) ILTAB, Danforth Plant Science Center, 975
            N. Warson Rd., St. Louis, MO 63132, USA
FEATURES             Location/Qualifiers
     source          1..2784
                     /mol_type="genomic DNA"
                     /country="Pakistan: Multan"
                     /lab_host="Nicotiana benthamiana"
                     /identified_by="Muhammad Shah Nawaz-ul-Rehman"
                     /segment="DNA-A"
                     /collection_date="Mar-2008"
                     /host="Gossypium harknessii"
                     /db_xref="taxon:10817"
                     /clone="ACMV/PK/Mul/Har/08"
                     /organism="African cassava mosaic virus"
     gene            136..477
                     /gene="AV2"
     CDS             136..477
                     /codon_start=1
                     /protein_id="ADD92131.1"
                     /gene="AV2"
                     /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD
                     LVSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA
                     HVQKAHDVQDV"
                     /product="AV2"
     gene            296..1078
                     /gene="AV1"
     CDS             296..1075
                     /codon_start=1
                     /protein_id="ADD92132.1"
                     /gene="AV1"
                     /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA
                     WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL
                     THRVGKRFCIKSVYILGKIWMDENIKKHNHTNNVMFYLLMDRKALWEYVPVTFGQIFN
                     MFDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQE
                     AGKYENHTENALLLYMACTHASNPVYATLKIRTYFYDSIGN"
                     /product="coat protein"
     gene            complement(1072..1476)
                     /gene="AC2"
     CDS             complement(1072..1476)
                     /codon_start=1
                     /protein_id="ADD92136.1"
                     /gene="AC2"
                     /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD
                     IITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI
                     NHVIRAADHVLFNVIEKTIACQLTHEIKFNIY"
                     /product="transcriptional activation protein"
                     /note="TrAP"
     gene            complement(1217..1624)
                     /gene="AC3"
     CDS             complement(1217..1624)
                     /codon_start=1
                     /protein_id="ADD92135.1"
                     /gene="AC3"
                     /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLH
                     INCSSHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQ
                     SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
                     /product="replication enhancer protein"
                     /note="REn"
     gene            complement(1533..2609)
                     /gene="AC1"
     CDS             complement(1533..2609)
                     /codon_start=1
                     /protein_id="ADD92133.1"
                     /gene="AC1"
                     /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK
                     ICRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSY
                     LDKDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ
                     FHNLNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVI
                     EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS
                     QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFIT
                     LTEPLYSGSNQSQSQTIQEASHPA"
                     /product="replication-associated protein"
     gene            complement(2153..2575)
                     /gene="AC4"
     CDS             complement(2153..2575)
                     /codon_start=1
                     /protein_id="ADD92134.1"
                     /gene="AC4"
                     /translation="MSFSHTQSVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNL
                     TCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHTWIRTATPSNGD
                     DFRSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN"
                     /product="movement protein"
ORIGIN      
        1 accggttggc cccgcccccc tttagacgtg gtccccgcgc actatgtatg tcggccaatc
       61 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt
      121 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg
      181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt
      241 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc
      301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa
      361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa
      421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag
      481 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga
      541 tgatgttaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct
      601 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg gtaagatctg
      661 gatggatgaa aatattaaga agcacaatca cactaataat gtgatgtttt acctgcttat
      721 ggatagaaag gccttatggg aatacgtccc agtaactttt gggcagatat ttaacatgtt
      781 cgataatgag cccagtactg caacaattaa gaacgatttg agggataggt ttcaggtgtt
      841 gaggaaattt catgccactg ttattggtgg tccatctggc atgaaggagc aggctttggt
      901 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg cagggaagta
      961 tgagaatcac acagagaatg cgttgctttt gtacatggca tgtactcatg cctccaatcc
     1021 tgtatatgct acgttgaaaa tacgtacata cttctatgac agtattggca attaataaat
     1081 attgaatttt atttcatgag tcaactgaca cgcaatagtt ttttcaatta cattgaacaa
     1141 aacatgatca gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta
     1201 tttaagtact tggtatctaa agacccttaa gaaaagacca gtctgaggct gtaaggtcgt
     1261 ccagatcctg aagttgagaa aacatttgtg aatccccagc tccttccgca ggttgtgatt
     1321 gaatcgaacc tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgcct
     1381 ggttattgtg aaatacaggg gattgtttat ttcccaggta tacacgccat tcattgcttg
     1441 aggagcagtg atgagttccc ctgtgcgtaa atccatgact ggagcagttg atatggaggt
     1501 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt
     1561 gtctgtgact gactttgatt ggaacctgag tagagtggtt ctgtgagggt gatgaagatt
     1621 gcattcttta atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta
     1681 taggacgagg ttggtcctgg attgcagagg aagatagtgg gaatgccacc tttaatttga
     1741 acgggtttcc cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta
     1801 aagtgcttta ggtagtgtgg atcgacgtca tcaatgacgt tgtaccaagc agcattattg
     1861 aagacctttg gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg
     1921 gcccatatcg tcttccctgt tctgctatca ccttctatga ctatactatt gggtctccat
     1981 ggccgcgcag cggaagccct aacattatca gcgacccatt cttcaagttc atcaggaact
     2041 tggtcaaagg aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc
     2101 ctttctaaat tactatttag attatgaaac tgaagtacaa agtcctttgg gactaattcc
     2161 ctaatgacat taagagcttc tgacttactg ccgctgttaa gcgctttggc gtaagcatca
     2221 tttgcggact gttgacctcc tctagcagat cgtccatcga tctgaaatcg tccccattcg
     2281 acggtgtcgc cgtccttatc caggtatgac ttgacatctg agcttgattt ggcaccttga
     2341 atgttggggt ggaaactggt gctacagctt gggtgtagac aatcgaagag acgattgttc
     2401 gtaatcgtga ttttgccctc gaattggatg agggcatgca agtgaggttc cccattctga
     2461 tgcagctctc tacagatttt aatgaactta gggttagatg ggagagagag tgtttgaatg
     2521 aatgacagca ggtgttcttt ggggatagaa cactttgggt atgtgagaaa gacattcttg
     2581 gcttgaactc taaaacgagg agtcctcatt ttgaccaagt caattggaga cactcaacta
     2641 gagacactct tgagcatctc ctcctgttaa ttggagacat tatataggtg tctctaaatg
     2701 gcattcttgt aataagttaa actttaattt gaatgaaaag cctcaaaagg cgcataacac
     2761 ccaaggggcc aaccgtataa tatt
//