LOCUS       GQ204108                2781 bp    DNA     circular VRL 28-AUG-2012
DEFINITION  African cassava mosaic virus clone ACMV/PK/Mul/Som/08 segment
            DNA-A, complete sequence.
ACCESSION   GQ204108
VERSION     GQ204108.1
KEYWORDS    .
SOURCE      African cassava mosaic virus
  ORGANISM  African cassava mosaic virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Nawaz-Ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M.
  TITLE     A melting pot of old world begomoviruses and their satellites
            infecting a collection of gossypium species in pakistan
  JOURNAL   PLoS ONE 7 (8), E40050 (2012)
   PUBMED   22899988
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Nawaz-ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2009) ILTAB, Danforth Plant Science Center, 975
            N. Warson Rd., St. Louis, MO 63132, USA
FEATURES             Location/Qualifiers
     source          1..2781
                     /mol_type="genomic DNA"
                     /country="Pakistan: Multan"
                     /lab_host="Nicotiana benthamiana"
                     /identified_by="Muhammad Shah Nawaz-ul-Rehman"
                     /segment="DNA-A"
                     /collection_date="Mar-2008"
                     /host="Gossypium somalense"
                     /db_xref="taxon:10817"
                     /clone="ACMV/PK/Mul/Som/08"
                     /organism="African cassava mosaic virus"
     gene            136..477
                     /gene="AV2"
     CDS             136..477
                     /codon_start=1
                     /protein_id="ADD92137.1"
                     /gene="AV2"
                     /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD
                     LVSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA
                     HVQKAHDVQDV"
                     /product="AV2"
     gene            296..1075
                     /gene="AV1"
     CDS             296..1072
                     /codon_start=1
                     /protein_id="ADD92138.1"
                     /gene="AV1"
                     /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA
                     WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKCISDVTRGPGL
                     THRVGKRFCIKSVYILGTIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM
                     FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA
                     GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
                     /product="coat protein"
     gene            complement(1069..1473)
                     /gene="AC2"
     CDS             complement(1069..1473)
                     /codon_start=1
                     /protein_id="ADD92142.1"
                     /gene="AC2"
                     /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD
                     IITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI
                     NHVIRAADHVLFNVIEKTIACQLTHEIKFNIY"
                     /product="transcriptional activation protein"
                     /note="TrAP"
     gene            complement(1214..1621)
                     /gene="AC3"
     CDS             complement(1214..1621)
                     /codon_start=1
                     /protein_id="ADD92141.1"
                     /gene="AC3"
                     /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLH
                     INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQ
                     SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
                     /product="replication enhancer protein"
                     /note="REn"
     gene            complement(1530..2606)
                     /gene="AC1"
     CDS             complement(1530..2606)
                     /codon_start=1
                     /protein_id="ADD92139.1"
                     /gene="AC1"
                     /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK
                     ICRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSY
                     LDKDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELIPKDFVLQ
                     FHNLNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVI
                     EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS
                     QRDWQSNTKYGKPVQIKVAFPLSSSAIQDQPRPIKSSYDEEKQEALKAWALKNAIFIT
                     LTEPLYSGSNQSQSQTIQEASHPA"
                     /product="replication-associated protein"
     gene            complement(2150..2572)
                     /gene="AC4"
     CDS             complement(2150..2572)
                     /codon_start=1
                     /protein_id="ADD92140.1"
                     /gene="AC4"
                     /translation="MSFSHTQSVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNL
                     TCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHTWIRTATPSNGD
                     DFRSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN"
                     /product="movement protein"
ORIGIN      
        1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc
       61 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt
      121 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg
      181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt
      241 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc
      301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa
      361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa
      421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag
      481 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga
      541 tgatgttaag caccttggta tctgtaagtg tattagtgat gtgacacgtg ggcctgggct
      601 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg gtacgatctg
      661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatgtttt acctgcttag
      721 ggatagaagg ccttatggca atacgcccca agactttggg cagatattta acatgtttga
      781 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag
      841 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa
      901 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga
      961 gaatcacaca gagaatgcgt tgcttttgta catggcatgt actcatgcct ccaatcctgt
     1021 atatgctacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaatatt
     1081 gaattttatt tcatgagtca actgacacgc aatagttttt tcaattacat tgaacaaaac
     1141 atgatcagca gccctaatta catggttaat tgagataaca cctatattat ccaagtattt
     1201 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca
     1261 gatcctgaag ttgagaaaac atttgtgaat ccccagctcc ttccgcaggt tgtgattgaa
     1321 tcgaacctgg actgttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt
     1381 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg
     1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat
     1501 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc
     1561 tgtgactgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca
     1621 ttctttaatg cccaggcctt tagcgcttct tgcttttcct cgtcgtagga actctttata
     1681 ggacgaggtt ggtcctggat tgcagaggaa gatagtggga atgccacctt tatttgaacg
     1741 ggtttcccgt attttgtgtt ggactgccag tcccgctggg accccatgaa ttccttaaag
     1801 tgctttaggt agtgtggatc gacgtcatca atgacgttgt accaagcagc attattgaag
     1861 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc
     1921 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc
     1981 cgcgcagcgg aagccctaac attatcagcg acccattctt caagttcatc aggaacttgg
     2041 tcaaaggaag aacatgggaa gggagaaata taaggagctg gtggctcctg gaaaatcctt
     2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggat taattcccta
     2161 atgacattaa gagcttctga cttactgccg ctgttaagcg ctttggcgta agcatcattt
     2221 gcggactgtt gacctcctct agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg
     2281 gtgtcgccgt ccttatccag gtatgacttg acatctgagc ttgatttggc accttgaatg
     2341 ttggggtgga aactggtgct acagcttggg tgtagacaat cgaagagacg attgttcgta
     2401 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc
     2461 agctctctac agattttaat gaacttaggg ttagatggga gagagagtgt ttgaatgaat
     2521 gacagcaggt gttctttggg gatagaacac tttgggtatg tgagaaagac attcttggct
     2581 tgaactctaa aacgaggagt cctcattttg accaagtcaa ttggagacac tcaactagag
     2641 acactcttga gcatctcctc ctgttaattg gagacattat ataggtgtct ctaaatggca
     2701 ttcttgtaat aagttaaact ttaatttgaa tgaaaagcct caaaaggcgc ataacaccca
     2761 aggggccaac cgtataatat t
//