LOCUS FM877473 2781 bp DNA circular VRL 23-JUL-2009 DEFINITION African cassava mosaic virus complete genome, isolate Burkina Faso-Kamboinse-2008. ACCESSION FM877473 VERSION FM877473.1 KEYWORDS complete genome. SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 AUTHORS Tiendrebeogo,F., Lefeuvre,P., Hoareau,M., Traore,V.S.E., Barro,N., Reynaud,B., Traore,A.S., Konate,G., Traore,O. and Lett,J.M. TITLE Occurrence of East African cassava mosaic virus-Uganda (EACMV-UG) in Burkina Faso JOURNAL Plant Pathol. 58 (4), 783-783 (2009) REFERENCE 2 (bases 1 to 2781) AUTHORS Tiendrebeogo,F. TITLE Direct Submission JOURNAL Submitted (20-NOV-2008) Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO FEATURES Location/Qualifiers source 1..2781 /mol_type="genomic DNA" /country="Burkina Faso" /collected_by="Fidele Tiendrebeogo" /collection_date="Sep-2008" /host="Manihot esculenta" /db_xref="taxon:10817" /isolate="Burkina Faso-Kamboinse-2008" /lat_lon="12.27 N 1.33 E" /organism="African cassava mosaic virus" gene 136..477 /gene="AV2" CDS 136..477 /db_xref="InterPro:IPR002511" /db_xref="InterPro:IPR005159" /db_xref="UniProtKB/TrEMBL:B8ZWP4" /codon_start=1 /protein_id="CAT00004.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHARLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQNV" /product="AV2 protein" gene 296..1072 /gene="AV1" CDS 296..1072 /db_xref="GOA:B8ZWP5" /db_xref="InterPro:IPR000263" /db_xref="InterPro:IPR000650" /db_xref="UniProtKB/TrEMBL:B8ZWP5" /codon_start=1 /protein_id="CAT00005.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFGIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM FDNEPSTATIKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYMACTHASNAVYATLKIRIYFYDSIGN" /product="coat protein (CP)" gene complement(1069..1473) /gene="AC3" CDS complement(1069..1473) /db_xref="InterPro:IPR000657" /db_xref="UniProtKB/TrEMBL:B8ZWP6" /codon_start=1 /protein_id="CAT00006.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLRPQTGLFLRVFRYQVLKYLDNIGVISI NDVIRAADHVLFNVIEKTIECQLTHEIKFNVY" /product="replication enhancer protein (REn)" gene complement(1214..1621) /gene="AC2" CDS complement(1214..1621) /db_xref="GOA:B8ZWP7" /db_xref="InterPro:IPR000942" /db_xref="UniProtKB/TrEMBL:B8ZWP7" /codon_start=1 /protein_id="CAT00007.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPAEPGHHNSTGSIQ SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKGI" /product="transcription activator protein (TrAP)" gene complement(1530..2606) /gene="AC1" CDS complement(1530..2606) /db_xref="GOA:B8ZWP8" /db_xref="InterPro:IPR001191" /db_xref="InterPro:IPR001301" /db_xref="InterPro:IPR022690" /db_xref="InterPro:IPR022692" /db_xref="UniProtKB/TrEMBL:B8ZWP8" /codon_start=1 /protein_id="CAT00008.1" /gene="AC1" /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTNFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPDEIEEWVADNVRDSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKTWALKNAIFIT LTEPLYSGSNQSQPQTIQEASHPT" /product="replication associated protein (Rep)" gene complement(2162..2677) /gene="AC4" CDS complement(2162..2677) /db_xref="InterPro:IPR002488" /db_xref="UniProtKB/TrEMBL:B8ZWP9" /codon_start=1 /protein_id="CAT00009.1" /gene="AC4" /translation="MSPINRRRCSRVSLVECLQLTWSKCELLVLEFKPRMSFSHTLSV LYPKNTCCHSSKHYLSHQTLSSLKSVESCIRMGNLTCMPSSNSRAKSRLRTIVSSIVY TPAVAPISTPTFKVPNQAQMSSPISIKTEIPSNGDNFRSMDDLLEAVNNQRMMLTPKR LTAAVSPKLLM" /product="AC4 protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 61 atgctgtagc gttaaaggtt atttattagt gggggaccac tatatactta caggcgaagt 121 tgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggtgcatggg 181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 241 actttgggcc acgatctggt tagagatcta gtctcggtca tcagggcacg taactatgtc 301 gaagcgacca ggagatatca tcatttccac gccaggctcc aaggttcgtc gaaggctgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagaa tgtatagaag 481 cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 541 tgatgtgaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 601 gacacacaga gtgggaaaga gatttggtat caagtccatt tacattcttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cacgaataat gtgatgttct acctgcttag 721 ggatagaagg ccgtatggca atacgcccca agactttggg cagatattta acatgtttga 781 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgatgag 841 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg cgttggtgaa 901 aaggttttac aggttgaatc atcacgtgac atacaatcac caggaggcag ggaagtacga 961 gaatcacaca gagaatgcgt tgcttttgta catggcatgt actcatgcct ccaatgctgt 1021 atatgctacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaacatt 1081 gaattttatt tcatgagtca attgacactc aatagttttt tcaattacat tgaacaaaac 1141 atgatcagca gctctaatta catcgttaat ggagataaca cctatattat ccaagtattt 1201 aagtacttgg tatctaaata cccttaagaa aagaccagtc tgaggccgta aggtcgtcca 1261 gatcttgaag ttgagaaaac atttgtgaat ccccagctcc ttcctcaggt tgtgattgaa 1321 tcgaacctgt actgttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt 1381 gattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1501 atgaacagcc acagacaaga tccactctcc tacgtcggat ggctcgcttc ttgaattgtc 1561 tgtggctgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1621 ttctttaatg cccaggtctt tagcgctgct tgcttttcct cgtctaggaa ctctttatag 1681 gacgaggtag gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1741 ggtttcccgt atttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag 1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcatc attattgaag 1861 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc 1921 catatcgtct tccctgttct gctatcacct tctattacaa tactattggg tctccatggc 1981 cgcgcagcgg aatccctaac attatcagcg acccattctt caatttcatc aggaacttgg 2041 tcaaaggaag aacatgggaa gggagaaaca taaggagctg gtggctcctg gaaaatccga 2101 tccaaattac tatttagatt atgaaattga agtacgaagt cctttgggac taattcccta 2161 attacattaa gagcttcgga cttactgccg ctgttaagcg ctttggcgta agcatcattc 2221 gctgattgtt gaccgcctct agcagatcgt ccatcgatct gaaattgtcc ccattcgacg 2281 gtatctccgt ctttatcgag ataggacttg acatctgagc ttgatttggc accttgaatg 2341 ttggggtgga aattggtgct acagctgggg tgtacacaat cgaagagacg attgttcgta 2401 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2461 agctctctac agattttaat gaacttaggg tttgatggga gagatagtgt ttggatgaat 2521 gacagcaggt gttctttggg tatagaacac ttagggtatg tgagaaagac attcttggct 2581 tgaactctaa aacgaggagt tcgcattttg accaagtcaa ttggagacac tcaactagag 2641 acactcttga gcatctcctc cggttaattg gagacattat ataggtgtct ctaaatggca 2701 ctcttgtaat aagtggaact ttaatttgaa tgaaaaggct caaaaggcgc agaacaccca 2761 aggggccaac cgtataatat t //