LOCUS KJ887792 2781 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF112AB:07 segment A, complete sequence. ACCESSION KJ887792 VERSION KJ887792.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2781 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="25-Aug-2007" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF112AB:07" /lat_lon="3.795 N 18.0917 E" /organism="African cassava mosaic virus" /altitude="411 m" gene 136..477 /gene="AV2" CDS 136..477 /codon_start=1 /protein_id="AIP88094.1" /gene="AV2" /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGASKTELRQPIQEPCYCPHCPRHKSKTGLGEQA HVQKAHDVQDV" /product="movement protein" gene 296..1072 /gene="AV1" CDS 296..1072 /codon_start=1 /protein_id="AIP88095.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WVNRPMYKKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLMDRRPYGNTPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1069..1473) /gene="AC3" CDS complement(1069..1473) /codon_start=1 /protein_id="AIP88096.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTIIRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLRPQTGLFLRVFRYQVLKYLDNIGVISI NDVIRAADHVLFNVIAKTIDCQLTHEITFNVY" /product="replication enhancer" gene complement(1214..1621) /gene="AC2" CDS complement(1214..1621) /codon_start=1 /protein_id="AIP88097.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHHSPGSIQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcription activator protein" gene complement(1530..2606) /gene="AC1" CDS complement(1530..2606) /codon_start=1 /protein_id="AIP88098.1" /gene="AC1" /translation="MRNPRFRIQAKNVFLTYPKCSLPKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCIHPSCSTNFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPVELEEWVADNVRDSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKAWALKNAIFIT LTEPLYSGSNQSQSPTIQEASHPA" /product="replication associated protein" gene complement(2162..2572) /gene="AC4" CDS complement(2162..2572) /codon_start=1 /protein_id="AIP88099.1" /gene="AC4" /translation="MSFSHTQSVLYPKNTYCHSFKHSLSHPTLSSLKYVESCIRMGNL TCMPSSNSRVKSRLRTIVSSIVYTQAVAPISTPIFKVPNQAQMSSPIWIKTETPSNGD NFRSMDDLLEAVNNPRMMLTPRRLTAAVSQRLLM" /product="C4 protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 61 atgttgtagc tgtaaaggtt atgtattagt ggtgggccac tatatacttg caggcgaagt 121 tgtggctagt gcgcaatgtg ggatccactg ctgaatgagt tcccagactc ggtgcatggg 181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 241 acgttgggcc acgatctggt tagggatcta gtctcagtta tcagggctcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggtgcgtc gaagactgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg gtgaacaggc ccatgtacaa aaagcccatg atgtacagga tgtatagaag 481 cccagacata cctaggggct gtgaaggccc atgtaaagtc cagtcgtttg agcagaggga 541 tgatgtgaag caccttggta tctgtaaggt gattagtgat gtaacgcgtg ggcctgggct 601 gacacacagg gtcggaaaga ggttttgtat caagtccatt tacattcttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatttttt atctgcttat 721 ggatagaagg ccttatggca atacgcccca agactttggg cagatattta acatgtttga 781 taacgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 841 gaaatttcat gccactgtta ttggtggtcc atcgggcatg aaggagcagg cgttggtgaa 901 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga 961 gaatcacaca gagaatgcgt tgcttctgta catggcatgt actcatgcct ccaatcctgt 1021 atatgcgacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaacatt 1081 gaatgttatt tcatgcgtca actgacagtc aatagttttg gcaattacat tgaacaaaac 1141 atgatcagca gctctaatta catcgttaat tgagataaca cctatattat ccaagtattt 1201 aaggacttgg tatctaaaga cccttaagaa aagaccagtc tgaggccgta aggtcgtcca 1261 gatcttgaag ttgagaaaac atttgtgaat ccccagctcc ttccgcaggt tgtgattgaa 1321 tcgaacctgg actgtgatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctgat 1381 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1501 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc 1561 ggtgattgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1621 ttctttaatg cccaggcctt tagcgccgct tgcttttcct cgtctaggaa ctctttatag 1681 gacgaggtag gtcctggatt gcagaggaag atagtgggaa ttccaccttt aatttgaacg 1741 ggtttcccgt atttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag 1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaagcagc attattgaag 1861 acctttggac taaggtccag gtggccacac aggtaattgt gtgggcctaa agatctggcc 1921 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1981 cgcgcagcgg aatccctaac attatcagcg acccattctt caagttcaac aggaacttgg 2041 tcaaaggaag aacacggaaa gggagaaaca taaggagctg gcggctcctg gaaaatccta 2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac taattcccta 2161 attacattaa gagcctctga cttactgccg ctgttaagcg ccttggcgta agcatcattc 2221 gcggattgtt gaccgcctcg agcagatcgt ccatcgatct gaaattgtcc ccattcgacg 2281 gtgtctccgt ctttatccag ataggacttg acatctgagc ttgatttggc accttgaata 2341 ttggggtgga aattggtgct acagcttggg tgtatacaat cgaagagacg attgttcgta 2401 atcgtgattt taccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2461 agctctctac atattttaat gaacttaggg ttggatggga gagagagtgt ttgaatgaat 2521 gacagtaggt gttctttggg taaagaacac tttgggtatg tgagaaagac attcttggct 2581 tgaattctaa aacgaggatt tctcattttg accaagtcaa ttggagacac tcaactagag 2641 acactcttga gcatctcctc ctattaattg gagacattat ataggtgtct ctaaatggca 2701 ttcttgtaat aagttgaact ttaatttgaa tgaaaaggtt caaaaggcgc agaacaccca 2761 aggggccaac cgtataatat t //