LOCUS KJ887802 2782 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF127AB:07 segment A, complete sequence. ACCESSION KJ887802 VERSION KJ887802.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2782) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2782) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2782 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="26-Aug-2007" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF127AB:07" /lat_lon="3.9252 N 18.063 E" /organism="African cassava mosaic virus" /altitude="407 m" gene 136..477 /gene="AV2" CDS 136..477 /codon_start=1 /protein_id="AIP88151.1" /gene="AV2" /translation="MWDPLVNEIPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHARLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLGEQA HVQKAHDVQDV" /product="movement protein" gene 296..1072 /gene="AV1" CDS 296..1072 /codon_start=1 /protein_id="AIP88152.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WVNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1069..1473) /gene="AC3" CDS complement(1069..1473) /codon_start=1 /protein_id="AIP88153.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVLKYLDTIGVISI NDVIRAADHVLFDVIAQTIECQLTHEIKFNIY" /product="replication enhancer" gene complement(1214..1621) /gene="AC2" CDS complement(1214..1621) /codon_start=1 /protein_id="AIP88154.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIQVNHRQFKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTVPAEPGHHNCPGSIQ SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKSL" /product="transcription activator protein" gene complement(1952..2605) /gene="AC1" misc_feature complement(1952..2605) /gene="AC1" /note="nonfunctional replication associated protein due to deletion" gene complement(2161..2571) /gene="AC4" CDS complement(2161..2571) /codon_start=1 /protein_id="AIP88155.1" /gene="AC4" /translation="MSFSHTQSVLYPKNTYCHSFKHSLSHQTLSSLKSVESCIRMGNL TCMPSSNSRVKSRLRTIVSSIVYTHAVAPVSTPTFKVPNQAQMSSPIWIRTETPSNGD NFRSMDDLLEAVNNPRMMLTPERLTAAVSQKLLT" /product="C4 protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 61 atgtgatagc tttaaaggtt atgtattagt ggtgggccac tatatacttg caggcgaagt 121 tgtggctagt gcgcaatgtg ggatccactg gtgaatgaga ttccagactc ggtgcatggg 181 ctcaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 241 actttgggcc acgatttggt cagggatcta gtctcagtta tcagggcgcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac gccaggctcc aaggttcgtc gaagactgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg gtgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 481 cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagagaga 541 tgatgtgaag caccttggca tctgtaaggt gattagtgat gtgacccgtg ggcctgggct 601 gacacacagg gtcggaaaga ggttttgtat caagtccatt tacatccttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatttttt acctgcttag 721 ggatagaagg ccgtatggca atgcgcccca agactttggg cagatattta acatgtttga 781 taacgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 841 gaaatttcat gccaccgtta ttggtggtcc ctctggcatg aaggagcagg cgttggtgaa 901 aaggttttac aggttgaacc atcacgtgac atataatcat caggaggcag ggaagtatga 961 gaatcacaca gagaatgctt tgctgctgta catggcatgt actcatgcct ccaaccctgt 1021 atatgcgacg ttgaaaatac gtatatactt ttatgacagt attggcaatt aataaatatt 1081 gaattttatt tcatgagtca actgacactc aatagtttgt gcaattacat cgaacaaaac 1141 atgatcagca gctctaatta catcgttaat tgaaataaca cctatagtat ccaagtattt 1201 aaggacttgg tatctaaaga ctcttaagaa aagaccagtc tgaggctgta aggtcgtcca 1261 gatcttgaag ttgagaaaac atttgtgaat ccccagctcc ttcctcaggt tgtgattgaa 1321 tcgaacctgg acagttatga tgtcctggtt cagcaggaac ggtcgttgtt ggtgcctggt 1381 gattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1501 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc 1561 tgtgattgac ttgtattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1621 ttctttaatg cccaggcctt tagcgctgct tgcttttcct cgtctaggaa ctctttatag 1681 gacgaggtag gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1741 ggtttcccgt atttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag 1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcagc attattgaag 1861 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatcgggcc 1921 catatcgtct tccctgttct gctatcacct tctatgacaa tactattagg tctccatggc 1981 cgcgcagcgg aatccctaac attatcagcg acccattctt caagttcatc aggaacttgg 2041 tcaaagaaga acatgggaag ggagaaacat aaggagctgg tggctcctgg aaaatcctat 2101 ctaaattact atttagatta tgaaattgaa gtacaaagtc ctttgggact aattccctaa 2161 ttacgttaag agcttctgac ttactgccgc tgttaagcgc tctggcgtaa gcatcattcg 2221 cggattgttg accgcctcta gcagatcgtc catcgatctg aaattgtccc cattcgacgg 2281 tgtctccgtc cttatccaga taggacttga catctgagct tgatttggca ccttgaatgt 2341 tggggtggaa actggtgcta cagcgtgggt gtatacaatc gaagagacga ttgttcgtaa 2401 tcgtgatttt accctcgaat tggatgaggg catgcaagtg aggttcccca ttctgatgca 2461 gctctctaca gattttaatg aacttagggt ttgatgggag agagagtgtt tgaatgaatg 2521 acagtaggtg ttctttgggt atagaacact ttgggtatgt gagaaagaca ttcttggctt 2581 gaattctgaa acgaggagtt ctcattttga ccaagtcaat tggagacgct ctcaattgga 2641 gacactcttg agcatctcct cctgttaatt ggagacatta tataggtgtc tccaaatggc 2701 attcttgtaa taagtggaac tttaatttga atgaaaaggc tcaaaaggcg cggaacaccc 2761 aaggggccaa ccgtataata tt //