LOCUS KJ887810 2779 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF161AB:08 segment A, complete sequence. ACCESSION KJ887810 VERSION KJ887810.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2779) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2779) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2779 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="16-Jan-2008" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF161AB:08" /lat_lon="4.3968 N 18.5186 E" /organism="African cassava mosaic virus" /altitude="340 m" gene 136..477 /gene="AV2" CDS 136..477 /codon_start=1 /protein_id="AIP88198.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHARLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLGEQA HVQKAHDVQDV" /product="movement protein" gene 296..838 /gene="AV1" misc_feature 296..838 /gene="AV1" /note="nonfunctional coat protein due to deletion" gene complement(1068..1472) /gene="AC3" CDS complement(1068..1472) /codon_start=1 /protein_id="AIP88199.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI NDVIRAADHVLFNVIAKTIACQLTHEIKFNLY" /product="replication enhancer" gene complement(1213..1620) /gene="AC2" CDS complement(1213..1620) /codon_start=1 /protein_id="AIP88200.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPAEPRHHNCPGSIQ SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcription activator protein" gene complement(2161..2604) /gene="AC1" misc_feature complement(2161..2604) /gene="AC1" /note="nonfunctional replication associated protein due to deletion" gene complement(2292..2570) /gene="AC4" misc_feature complement(2292..2570) /gene="AC4" /note="nonfunctional C4 protein due to deletion" ORIGIN 1 accggttggc cccgcccccc ctttaaacgt ggtcccgcgc actacgtatg tcggccaatc 61 atgtgatagc tgtaaaggtt atgtattagt ggtgggccac tatatacttg caggcgaagt 121 tgtggctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggttcatggg 181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcctagt 241 actttgggcc acgatttggt cagggatcta gtttcagtta tcagggctcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac gccaggctcc aaggttcgtc gaagactgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacggca caaatcgaaa 421 acgggcctgg gtgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 481 cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 541 tgatgtgaag caccttggca tctgtaaggt gattagtgat gtgacccgtg ggcctgggct 601 gacacacagg gttggaaaga ggttttgtat caagtccatt tacatccttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatttttt acctgcttag 721 ggatagaagg ccgtatggca atgcgcccca agactttggg cagatattta acatgtttga 781 taacgagccc agtactgcca caattaagaa cgatttgagg gataggtttc aggtgtgagg 841 aaatttcatg ccactgttat tggtggtccc tctggcatga aggagcaggc gttggtgaaa 901 aggttttaca ggttgaatca tcacgtgaca tataatcatc aggaggcagg gaagtatgag 961 aatcacacag agaatgcttt gcttctgtac gtggcatgta ctcatgcctc caaccctgta 1021 tatgcgacgt tgaaaatacg tatatacttc tatgacagta ttggcaatta ataaagattg 1081 aattttattt catgagtcaa ctgacacgca atagttttgg caattacatt gaacaaaaca 1141 tgatcagcag ctctaattac atcgttaatt gagataacac ctatattatc caagtattta 1201 agtacttggt atctaaagac ccttaagaaa agaccagtct gaggctgtaa ggtcgtccag 1261 atcttgaagt tgagaaaaca tttgtgaatc cccagctcct tcctcaggtt gtgattgaat 1321 cgaacctgga cagttatgat gtcttggttc agcaggaatg gtcgttgttg gtgcctggtg 1381 attgtgaaat acaggggatt gtttatttcc caggtataca cgccattcat tgcttgagga 1441 gcagtgatga gttcccctgt gcgtaaatcc atgattggag cagttgatat ggaggtaata 1501 ggaacagcca cagacaagat ccactctcct acgccggatg gcgcgcttct tgaattgtct 1561 gtgattgact ttgattggaa cctgagtaga gtggttctgt gagggtgacg aagattgcat 1621 tctttaatgc ccaggccttt agcgcctctt gcttttcctc gtcgaggaac tctttatagg 1681 acgaggtagg tcctggattg cagaggaaga tagtgggaat gccaccttta atttgaacgg 1741 gtttcccgta tttcgtgttg gactgccagt ccctctggga ccccatgaat tccttaaagt 1801 gctttaggta gtggggatcg acgtcatcaa tgacgttgta ccaggcagca ttattgaaga 1861 cctttggact aaggtccagg tgtccacaca ggtaattgtg tgggcctaaa gatctggccc 1921 atatcgtctt ccctgttctg ctatcacctt ctatgacaat actattgggt ctccatggcc 1981 gcgcagcgga atccctaaca ttatcagcga cccattcttc aagttcatca ggaacttggt 2041 caaaggaaga acatgggaag ggagaaacat aaggagctgg tggctcctgg aaaatcctat 2101 ctaaattact atttagattg tgaaactgaa gtacaaagtc ctttgggact aattccctaa 2161 ttacgttaag agcttctgac ttactgccgc tgttaagcgc tttggcgtaa gcatcattcg 2221 cggattgttg accgcctcta gcagatcgtc catcgatctg aaattgtccc cattcgacgg 2281 tgtctccgtc cttatccaga taggacttga catctgagct tgatttggca ccttgaatgt 2341 ggggtggaaa ctggtgctac atcttgggtg tacacaatcg aagagacgat tgttcgtaat 2401 cgtgatttta ccctcgaatt ggatgagggc atgcaagtga ggttccccat tctgatgcag 2461 ctctctacag attttaatga acttagggtt ggatgggaga gagagtgtct gaatgaatga 2521 gagtaggtgt tctttgggta tagaacactt tgggtatgtg agaaagacat tcttggcttg 2581 aagtctaaaa cgaggagttc tcatgttgac caagtcaatt ggagacactc aactagagac 2641 actcttgagc atctcctcct gttaattgga gacaatatat aggtgtctct aaatggcatt 2701 cctgtaataa gtggaacttt aatttgaatg aaaaggctca aaaggcgcgg aacacccaag 2761 gggccaaccg tataatatt //