LOCUS KJ887626 2726 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF279BE:08 segment B, complete sequence. ACCESSION KJ887626 VERSION KJ887626.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2726) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2726) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2726 /mol_type="genomic DNA" /country="Central African Republic" /segment="B" /collection_date="2008" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF279BE:08" /lat_lon="4.2057 N 17.6072 E" /organism="African cassava mosaic virus" /altitude="484 m" gene 436..1206 /gene="BV1" CDS 436..1206 /codon_start=1 /protein_id="AIP87611.1" /gene="BV1" /translation="MYSSRKQSRTFQRKFNINTTSRYPIRRKYVAGHTRPCVRRRLSY EPVERPLVHNVLCEKQHGDVFNLQQNTSYTSFVTYPSRGPSGDGRSRDYIKLQSISVS GVIHAKANCNDDPMEVSPVVNGVFVFSVIMDTKPYLPAGVQALPTFEELFGSYSAGYV NLRLLNNQQHRYRVLHSVKRIVSSSGDTKISQFRFNKRLSTRRYTIWASFHDVDLVNA GGNYRNISKNAILVSYAFVSEHSMSCKPFVQIETSYVG" /product="nuclear shuttle protein" gene complement(1215..2111) /gene="BC1" CDS complement(1215..2111) /codon_start=1 /protein_id="AIP87612.1" /gene="BC1" /translation="MDTSVPVISSDYIQSARTEYKLTNDESPITLQFPSTLERTRVRI MGKCMKVDHVVIEYRNQVPFNAQGSVIVTIRDTRLSDEQQDQAQFTFPIGCNVDLHYF SASYFSIDDNVPWQLLYKVEDSNVKNGVTFAQIKAKLKLSAAKHSTDIRFKQPTIKIL SKDYGPDCVDFWSVGKPKPIRRLIQNEPGTDYDTGPKYRPITVQPGETWATKSTIGRS TSMRYTGPKPIDLDGSSSKQYASEAEFPLRGLHKLPEASLDPGDSISQTQSMSKQDIE SIIEQTINKCLIAHRGSSHKDL" /product="movement protein" ORIGIN 1 accggttggc cccgcccctg ttggacatgt ggaccccgcg cacgggtggc ctcgtccccc 61 ctttgaaagt gggttcccca tctttctctt tcctgcagat acgacggtgg tccccgcatg 121 cagatgttgt cagctatgga tattgcatgt gtggcccaca tgctaataaa tgatctgcgg 181 gcctatcgaa tgacagcttg tgctactaaa ttatatttag tatattgttc atgtcactga 241 gtttaataaa atgatatatt ttatgtaact ttgaatatta gccattcgat atgagggata 301 tatagtcgtc gatctgacaa cgaccatgaa ggacaattaa ggctagtagc gtaattgtgt 361 atgtattata tatagggttg taacatacag gagttggaga atatcagata tctgaataat 421 atacagggat tggtaatgta tagtagcagg aagcagtcga gaactttcca gaggaaattt 481 aacattaata ccactagcag gtatccaatc aggcgtaagt atgttgctgg gcatacgaga 541 ccatgtgtta ggcgaagatt gtcatatgag ccagtggaga gaccgttggt ccataatgtt 601 ttgtgtgaga agcaacacgg cgatgtgttt aatttgcagc agaacacaag ttacacctca 661 tttgtaactt atccttccag gggaccatct ggtgatgggc gtagtcggga ttacatcaag 721 ttgcaaagta tttccgtctc gggagtgata catgcgaagg ctaattgcaa cgatgatcct 781 atggaggtgt ctcctgtggt taatggagtg ttcgtgttta gcgtaatcat ggacacaaag 841 ccttatttac ctgctggtgt tcaagctctt cctacatttg aagagctctt tggatcatat 901 tctgccggtt acgttaattt aagattattg aataatcaac agcatcgata tagggtattg 961 catagcgtga aacgtatcgt gtcatcgtca ggcgatacta agatatctca atttaggttt 1021 aataagcgat tgagcaccag gcgatatact atttgggcat cattccatga tgtggatcta 1081 gtaaatgcag ggggaaatta taggaacata agcaagaatg ctattcttgt cagttatgcg 1141 tttgtatcag agcattcaat gtcttgtaag ccatttgtac aaatagaaac atcctatgtt 1201 ggatgattta ttaatcataa atctttatgg ctactgcctc tatgtgcgat taagcacttg 1261 tttatagtct gttctataat gctttcaatg tcctgtttcg acatggactg ggtttgggaa 1321 atggagtccc ctggatctag ggaagcttca ggtagcttgt gtagtcctct aagtgggaat 1381 tctgcctcag aggcatactg cttggaggat gagccgtcga ggtcaatggg ttttgggcct 1441 gtgtatctca tgcttgtaga gcgcccaata gttgattttg tagcccatgt ttctcctggt 1501 tggaccgtga tgggcctata tttaggccca gtgtcataat ctgtgccggg ctcattctga 1561 atgagccgtc gaatgggctt aggtttccca acggaccaga agtcgacaca gtcaggccca 1621 tagtctttgg atagtatttt gatagtgggc tgtttaaatc gaatgtccgt tgaatgtttg 1681 gcagctgaca gcttcagttt tgccttaatt tgggcaaatg tgactccatt ctttacgttg 1741 gagtcttcaa ccttatatag cagctgccat ggcacgttat catcaattga aaagtatgat 1801 gcagagaaat aatggaggtc cacattacac cctatgggaa atgtgaattg ggcttgatcc 1861 tgttgctcat cactgagccg agtgtcccta atggtgacaa taacagaacc ttgtgcatta 1921 aagggcactt gattcctgta ctcaatgacg acatggtcga ccttcatgca tttgcccatg 1981 atacgtaccc ttgttcgttc aagggtcgaa ggaaattgaa gtgtaatcgg tgattcatca 2041 ttcgtcagtt tgtattcagt cctggcggat tgaatatagt cgctggagat gacaggtaca 2101 gatgtatcca tgtgcaacac tcagattata agcttgtcaa agccacaaca cctgtcagat 2161 aagaaacatg attaatctat tgtaaaactg gccgcgcagc ggaatggctg taattgaaga 2221 caaatgagaa gagtttgtca acaggataaa cagagtgtag aaatatagac atatattttt 2281 tatcctatcg gaaaaatgct tctatgtgta atccaattca aacagttata tatgcataca 2341 tcattactcg atgaaacatg atatatgaag agatatgaac cgtatacgaa cgtgaattgg 2401 atatcctctg gagtgaaata tggataggct tatgatcaaa gtggtgatat aaatatgttg 2461 tatatattta ttaaggagtt atccaacgaa tgatagttga cgtcgttaga tttgcaagtt 2521 caaatctaaa ataagcaatt acattatagt gagagaaagt tagagagaga cgctctcaat 2581 tggagacaca cttgagcatc ttctcctgta aattggagac aatatatagt tgtctccaaa 2641 tggcattctt gtaataaagt gaactttaat ttgaattaaa aggctcaaaa ggctcagaac 2701 acccaagggg ccaaccgtat aatatt //