LOCUS KJ887769 2785 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF27AN:07 segment A, complete sequence. ACCESSION KJ887769 VERSION KJ887769.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2785) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2785) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2785 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="10-Aug-2007" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF27AN:07" /lat_lon="4.6572 N 22.2798 E" /organism="African cassava mosaic virus" /altitude="466 m" gene 137..478 /gene="AV2" CDS 137..478 /codon_start=1 /protein_id="AIP87957.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGASKTELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="movement protein" gene 297..1073 /gene="AV1" CDS 297..1073 /codon_start=1 /protein_id="AIP87958.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVVSDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHAENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1070..1474) /gene="AC3" CDS complement(1070..1474) /codon_start=1 /protein_id="AIP87959.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLRPQTGLFLRVFRYQVLKYLDNMGVISI NNVIRAADHVLFNVIAQTIECQLTHEIKFNLY" /product="replication enhancer" gene complement(1215..1622) /gene="AC2" CDS complement(1215..1622) /codon_start=1 /protein_id="AIP87960.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQVKKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPTEPGHHNSPGSIQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKSL" /product="transcription activator protein" gene complement(1531..2607) /gene="AC1" CDS complement(1531..2607) /codon_start=1 /protein_id="AIP87961.1" /gene="AC1" /translation="MRTPRFRIQAKNVFLTYPKCSLSKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPIEIEEWVADNVRHSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKAWALKNAIFIT LTEPLYSGSNQSQSQTSQEASHPA" /product="replication associated protein" gene complement(2406..2573) /gene="AC4" misc_feature complement(2406..2573) /gene="AC4" /note="nonfunctional C4 protein due to mutation" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 61 atgcggtagc tttaaagggt tatttattag tggtgggcca ctatatactt gcaggcgaag 121 ttgttgctag tgcgcaatgt gggatccact ggtgaatgag tttccagact cggtgcatgg 181 gctgaggtgt atgcttgcaa ttaaatattt gcaggcctta gaggatacat acgagcccag 241 tactttgggc cacgatctgg tgagggatct agtctcagtc atcagggcgc gtaattatgt 301 cgaagcgacc aggagatatc atcatttcca ctccaggctc caaggtgcgt cgaagactga 361 acttcgacag cccatacagg aaccgtgcta ctgcccccac tgtccacgtc acaaatcgaa 421 aacgggcctg gatgaacagg cccatgtaca gaaagcccat gatgtacagg atgtatagaa 481 gcccagatat acctaggggc tgtgaaggcc catgtaaggt ccagtcgttt gagcagaggg 541 atgatgtgaa gcatcttggt atctgtaagg tggttagtga tgtgacgcgt gggcctgggc 601 tgacacacag ggtcggaaag agattttgta tcaagtccat ttacattctt ggtaagatct 661 ggatggatga aaatattaag aagcagaatc acactaataa tgtgatgttt tatctgctta 721 gggatagaag gccatatggc aatacgcccc aagactttgg gcagatattt aacatgtttg 781 ataatgagcc cagtactgca accattaaga acgatttgag ggataggttt caggtgttga 841 ggaaatttca tgccactgtt attggtggtc catcgggcat gaaggagcag gcgttggtga 901 aaaggtttta caggttgaat catcacgtga catataatca tcaggaggca gggaagtatg 961 agaatcacgc agagaatgcg ttgcttctgt acatggcatg tactcatgcc tccaatcctg 1021 tatatgctac gttgaaaata cgtatatact tctatgacag tattggcaat taataaagat 1081 tgaattttat ttcatgagtc aactgacact caatagtttg tgcaattaca ttgaacaaaa 1141 catgatcagc agctctaatg acattattaa ttgatataac acccatatta tccaagtatt 1201 taagtacttg gtatctaaag actcttaaga aaagaccagt ctgaggccgt aaggtcgtcc 1261 agatcttgaa gttgagaaaa catttgtgaa tccccagctc cttccgcagg ttgtgattga 1321 atcgaacctg gactgttatg atgtcctggt tcagtaggaa tggtcgttgt tggtgcctgg 1381 tgattgtgaa atacagggga ttgtttattt cccaggtata cacgccattc attgcttgag 1441 gagcagtgat gagttcccct gtgcgtaaat ccatgattgg agcagttgat atgcaggtaa 1501 tatgaacagc cacagacaag atccactctt ctacgccgga tggctcgctt cttgacttgt 1561 ctgtgattga ctttgattgg aacctgagta gagtggttct gtgagggtga tgaagattgc 1621 attctttaat gcccaggcct ttagcgctgc ttgcttttcc tcgtctagga actctttata 1681 ggacgaggta ggtcctggat tgcagaggaa gatagtggga atgccacctt taatttgaac 1741 gggtttcccg tatttcgtgt tggactgcca gtccctctgg gaccccatga attccttaaa 1801 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcat cattattgaa 1861 gacctttgga ctaaggtcca ggtgtccaca caggtaattg tgtgggccta aagatcgggc 1921 ccatatcgtc ttccctgttc tgctatcacc ttctatgaca atactattgg gtctccatgg 1981 ccgcgcagcg gaatgcctaa cattatcagc gacccattct tcaatttcaa taggaacttg 2041 gtcaaaggaa gaacatggga agggagaaac ataaggagct ggaggctcct ggaaaatcct 2101 atctaaatta ctattgagat tatgaaattg aagtacaaag tcctttggga ctaattccct 2161 aatgacatta agagcttctg acttactgcc gctgttaagc gctttggcgt aagcatcatt 2221 cgctgattgt tgaccgcctc tagcagatcg tccatcgatt tgaaattgtc cccattcgac 2281 ggtgtctccg tccttatcca gataggactt gacatctgag cttgatttgg caccttgaat 2341 gttggggtgg aaactggtgc tacagctcgg gtgtacacaa tcgaatagac gattgtttgt 2401 aatcgttatt ttaccctcga attggatgag agcatgcaag tgaggttccc cattctgatg 2461 cagctctcta cagattttaa taaatttagg gtttgatggg agagagagtg tttgaatgaa 2521 cgacagtagg tgttctttgg atagagaaca ctttgggtag gtgagaaaga cattcttggc 2581 ttgaattcta aaacgaggag ttctcatttt gaccaagtca attggagacg ctctcaatcg 2641 gagacacact tgagcatctc ctcctattaa ttggagacat tatataggtg tctctaaatg 2701 gcattcttgt aataagcgta actttaattt gaatgaaaag gctcaaaagg ctcagaacac 2761 cccaaggggc caaccgtata atatt //