LOCUS KJ887812 2781 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF345AB:08 segment A, complete sequence. ACCESSION KJ887812 VERSION KJ887812.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2781 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="2008" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF345AB:08" /lat_lon="4.33 N 18.563 E" /organism="African cassava mosaic virus" /altitude="278 m" gene 137..478 /gene="AV2" CDS 137..478 /codon_start=1 /protein_id="AIP88207.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYWQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHARLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLGEQA HVQKAHDVQDV" /product="movement protein" gene 297..1073 /gene="AV1" CDS 297..1073 /codon_start=1 /protein_id="AIP88208.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WVNRPMYRKPTMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1070..1474) /gene="AC3" CDS complement(1070..1474) /codon_start=1 /protein_id="AIP88209.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI NDVIRAADHVLFNVIAKTIECQLTHEIKFDLY" /product="replication enhancer" gene complement(1215..1622) /gene="AC2" CDS complement(1215..1622) /codon_start=1 /protein_id="AIP88210.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLH INCFNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTVPAEPGHHNCPGSIQ SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcription activator protein" gene complement(1531..2607) /gene="AC1" CDS complement(1531..2607) /codon_start=1 /protein_id="AIP88211.1" /gene="AC1" /translation="MRTPRFRIQAKNVFLTYPKCSISKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSY LDKDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFIT LTEPLYSGSNQSQSQTIQEASHPA" /product="replication associated protein" gene complement(2163..2453) /gene="AC4" misc_feature complement(2163..2453) /gene="AC4" /note="nonfunctional C4 protein due to mutation" ORIGIN 1 accggttggc cccgcccccc ctttaaacgt ggtccccgcg cactacgtat gtcggccaat 61 catgtgatag ctttaaaggt tatgtattag tggtgggcca ctatatactt gcaggcgaag 121 ttgtggctag tgcgcaatgt gggatccact ggtgaatgag tttccagact cggttcatgg 181 gctcaggtgt atgcttgcaa ttaaatattg gcaggcctta gaggatacat acgagcccag 241 tacgttgggc cacgatttgg tcagggatct agtctcagtt atcagggctc gtaattatgt 301 cgaagcgacc aggagatatc atcatttcca cgccaggctc caaggttcgt cgaagactga 361 acttcgacag cccatacagg aaccgtgcta ctgcccccac tgtccacgtc acaaatcgaa 421 aacgggcctg ggtgaacagg cccatgtaca gaaagcccac gatgtacagg atgtatagaa 481 gcccagacat acctaggggc tgtgaaggcc catgtaaggt ccagtcgttt gagcagaggg 541 atgatgtgaa gcaccttggc atctgtaagg tgattagtga tgtgacccgt gggcctgggc 601 tgacacacag ggtcggaaag aggttttgta tcaagtccat ttacatcctt ggtaagatct 661 ggatggatga aaatattaag aagcagaatc acactaataa tgtgattttt tacctgctta 721 gggatagaag gccgtatggc aatgcgcccc aagactttgg gcagatattt aacatgtttg 781 ataacgagcc cagtactgcc acaattaaga acgatttgag ggataggttt caggtgctga 841 ggaaatttca tgccaccgtt gttggtggtc cctctggcat gaaggagcag gcgttggtga 901 aaaggtttta caggttgaac catcacgtga catataatca tcaggaggca gggaagtatg 961 agaatcacac agagaatgct ttgcttctgt acatggcatg tacgcatgcc tccaaccctg 1021 tatatgcgac gttgaaaata cgtatatact tctatgacag tattggcaat taataaagat 1081 cgaattttat ttcatgagtc aactgacact caatagtttt ggcaattaca ttgaacaaaa 1141 catgatcagc agctctaatt acatcgttaa ttgagataac acctatatta tccaagtatt 1201 taagtacttg gtatctaaag acccttaaga aaagaccagt ctgaggctgt aaggtcgtcc 1261 agatcttgaa gttgagaaaa catttgtgaa tccccagctc cttcctcagg ttgtgattga 1321 atcgaacctg gacagttatg atgtcctggt tcagcaggaa cggtcgttgt tggtgcctgg 1381 tgattgtgaa atacagggga ttgtttattt cccaggtata cacgccattc attgcttgag 1441 gagcagtgat gagttcccct gtgcgtaaat ccatgattga agcagttgat atggaggtaa 1501 taggaacagc cacagacaag atccactcgc ctacgccgga tggctcgctt cttgaattgt 1561 ctgtgattga ctttgattgg aacctgagta gagtggttct gtgagggtga tgaagattgc 1621 attctttaat gcccaggcct ttagcgcctc ttgcttttcc tcgtcgagga actctttata 1681 ggacgaggta ggtcctggat tgcagaggaa gatagtggga atgccacctt taatttgaac 1741 gggtttcccg tatttcgtgt tggactgcca gtccctctgg gaccccatga attccttaaa 1801 gtgctttaag tagtggggat cgacgtcatc aatgacgttg taccaggcag cattattgaa 1861 gacctttgga ctaaggtcca ggtgtccaca caggtaattg tgtgggccta aagatctggc 1921 ccatatcgtc ttccctgttc tgctatcacc ttctatgaca atactattgg gtctccatgg 1981 ccgcgcagcg gaatctctaa cattatcagc gacccattcc tcaagttcat caggaacttg 2041 gtcaaaggaa gaacatggga agggagaaac ataaggagct ggtggctcct ggaaaatcct 2101 atctaaatta ctatttagat tgtgaaactg aagtacaaag tcctttggga ctaattccct 2161 aattacgtta agagcttctg acttactgcc gctgttaagc gctttggcgt aagcatcatt 2221 cgcggattgt tgaccgcctc tagcagatcg tccatcgatc tgaaatcgtc cccattcgac 2281 ggtgtctccg tccttatcca gataggactt gacatctgag cttgatttgg caccttgaat 2341 gttggggtgg aaactggtgc tacagcttgg gtgtacacaa tcgaagagac gattgttcgt 2401 aatcgtgatt ttaccctcga attggatgag ggcatgcaag tgaggttccc cattctgatg 2461 cagctctctg cagattttaa tgaacttagg gtttgaaggg agagagagtg tttgaatgaa 2521 cgacagtagg tgttctttgg atatagaaca cttggggtat gtgagaaaga cgttcttggc 2581 ttgaattcta aaacgaggag ttctcatgtt gaccaagtca attggagaca cgcaactgga 2641 gacactcttg agcatctcct cctattaatt ggagacatta tatagttgtc tccaaatggc 2701 attcttgtaa taagtgaact ttaatttgaa tgaaaaggct caagaggcgc ggaacaccca 2761 aggggccaac cgtataatat t //