LOCUS KJ887784 2781 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate CF:CF87AB1:07 segment A, complete sequence. ACCESSION KJ887784 VERSION KJ887784.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2781) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2781 /mol_type="genomic DNA" /country="Central African Republic" /segment="A" /collection_date="20-Aug-2007" /host="cassava" /db_xref="taxon:10817" /isolate="CF:CF87AB1:07" /lat_lon="4.493 N 15.8092 E" /organism="African cassava mosaic virus" /altitude="591 m" gene 136..477 /gene="AV2" CDS 136..477 /codon_start=1 /protein_id="AIP88046.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEETYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="movement protein" gene 296..1072 /gene="AV1" CDS 296..1072 /codon_start=1 /protein_id="AIP88047.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYKLNHHVTYNHQEA GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1069..1473) /gene="AC3" CDS complement(1069..1473) /codon_start=1 /protein_id="AIP88048.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVIKYLDNMGVISI NNVIRAADHVLFNVIAKTIECQLTHEIKFNVY" /product="replication enhancer" gene complement(1214..1621) /gene="AC2" CDS complement(1214..1621) /codon_start=1 /protein_id="AIP88049.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQFRKRAIRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNCPGSIQ SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKSL" /product="transcription activator protein" gene complement(1530..2606) /gene="AC1" CDS complement(1530..2606) /codon_start=1 /protein_id="AIP88050.1" /gene="AC1" /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGHQSANDAYAKALNSGSKSDALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPVELEEWVADNVRDSAARPWRPNSVVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFIT LTEPLYSGSNQSQSQTIQEASHPA" /product="replication associated protein" gene complement(2162..2572) /gene="AC4" CDS complement(2162..2572) /codon_start=1 /protein_id="AIP88051.1" /gene="AC4" /translation="MSFSHTQSVLYPKNTFCHSFKHSLSHQTLSSLKSVESCIRMGNL TCMPSSNSRVKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTETPSNGD NFRSMDDLLEAVTNQRMMLTPKRLTAAVSQTLLM" /product="C4 protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 61 atgctgtagc tttaaaggtt atgtattagt ggtggaccac tatatactta caggcgaagt 121 tgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggtgcatggg 181 ctgaggtgta tgcttgcaat taaatatttg caggccttag aggagacata cgagcccagt 241 actttgggcc acgatctggt tagagatcta gtctcagtta tcagggcgcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaagactgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 481 cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 541 tgatgtgaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 601 gacacacagg gtcggaaaga ggttttgtat caagtccgtg tacattcttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatgtttt acctgcttag 721 ggatagaagg ccttatggca atacgcccca agactttggg cagatattta atatgtttga 781 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 841 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa 901 aaggttttac aagttgaacc atcacgtgac atataatcat caggaggcag ggaagtatga 961 gaatcacaca gagaatgctt tgctgttgta catggcatgt actcatgcct ccaatcctgt 1021 atatgctacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaacatt 1081 gaattttatt tcatgagtca actgacactc aatagttttg gcaattacat tgaacaaaac 1141 atgatcagca gctctaatga cattgttaat tgagataaca cccatattat ccaagtattt 1201 aattacttgg tatctaaaga ctcttaagaa aagaccagtc tgaggctgta aggtcgtcca 1261 gatcttgaag ttgagaaaac atttgtgaat ccccagctcc ttcctcaggt tgtgattgaa 1321 tcgaacctgg acagttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt 1381 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1501 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ctgaattgtc 1561 tgtgattgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1621 ttctttaatg cccaggcctt tagcgcttct tgcttttcct cgtctaggaa ctctttatag 1681 gacgaggtag gtcctggatt gcagaggaag atagtgggaa ttccgccttt aatttgaacg 1741 ggtttcccgt atttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag 1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcagc attattaaag 1861 acctttggac taaggtccag gtgtccgcat aagtaattat gtgggcctaa agagcgggcc 1921 catatcgtct tccctgttct gctatcacct tctatgacaa cactattggg tctccatggc 1981 cgcgcagcgg aatctctaac attatcagcg acccattctt caagttcaac aggaacttgg 2041 tcaaaggaag aacatgggaa gggagaaaca taaggagctg gtggctcctg aaaaatccta 2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac taattcccta 2161 attacattaa gagcgtctga cttactgccg ctgttaagcg ctttggcgta agcatcattc 2221 gctgattggt gaccgcctct agcagatcgt ccatcgatct gaaattgtcc ccattcgacg 2281 gtgtctccgt ccttatccag ataggacttg acatctgagc ttgatttggc accttgaatg 2341 ttggggtgga aactggtgct acagcttggg tgtacacaat cgaagagacg attgttcgta 2401 atcgtgattt taccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2461 agctctctac agattttaat gaacttaggg tttgatggga gagagagtgt ttgaatgaat 2521 gacagaaggt gttctttggg tatagaacac tttgggtatg tgagaaagac attcttggct 2581 tgaattctaa aacgaggagt tctcattttg accaagtcaa ttggagacac tcaactggag 2641 acactcttga gcatctcctc ctgtaaattg gagacattat ataggtgtct ccaaatggca 2701 ttcttgtaat aagtggaact ttaatttgaa ttaaaaggct caaaaggtac agaacaccca 2761 aggggccaac cgtataatat t //