LOCUS       HG530110                2780 bp    DNA     circular VRL 22-SEP-2014
DEFINITION  African cassava mosaic virus DNA A complete sequence, isolate
            KE:mtw:CMD-MI64:12.
ACCESSION   HG530110
VERSION     HG530110.1
KEYWORDS    .
SOURCE      African cassava mosaic virus
  ORGANISM  African cassava mosaic virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1
  AUTHORS   Ilyas,M. and Fauquet,C.M.
  TITLE     Diversity of cassava-infecting begomoviruses in Africa
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Ilyas,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2013) Ilyas M., IICI Trait Improvement Lab,
            Donald Danforth Plant Science Center, 975 N Warson Road, Saint
            Louis, Missouri, 63132, USA
FEATURES             Location/Qualifiers
     source          1..2780
                     /mol_type="genomic DNA"
                     /country="Kenya:Mtwapa"
                     /isolation_source="host leaf"
                     /collected_by="Muhammad Ilyas"
                     /segment="DNA A"
                     /collection_date="2012"
                     /host="Manihot esculenta"
                     /db_xref="taxon:10817"
                     /clone="MI64"
                     /isolate="KE:mtw:CMD-MI64:12"
                     /organism="African cassava mosaic virus"
     gene            135..476
                     /gene="AV2"
     CDS             135..476
                     /codon_start=1
                     /protein_id="CDI41124.1"
                     /gene="AV2"
                     /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD
                     LVSVIRARNYVEATRRYHHFHTRLEGSSKAELRQPIQEPCYCPHCPRHKSKTGLGEQA
                     HVQKAHDVQDV"
                     /product="AV2 protein"
     gene            295..1071
                     /gene="CP"
     CDS             295..1071
                     /codon_start=1
                     /protein_id="CDI41125.1"
                     /gene="CP"
                     /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA
                     WVNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL
                     THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM
                     FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA
                     GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
                     /product="Coat Protein"
     gene            complement(1068..1472)
                     /gene="AC3"
     CDS             complement(1068..1472)
                     /codon_start=1
                     /protein_id="CDI41126.1"
                     /gene="AC3"
                     /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD
                     IISVQVRFNHNLRKALGIHKCFLNFRIWTTLRPPTGLFLRVFRYQVLKYLDNIGVVSI
                     NDVIRAAAHVLFNVLENTIECQLTHEIKFNVY"
                     /product="Replication Enhancer Protein"
     gene            complement(1213..1620)
                     /gene="AC2"
     CDS             complement(1213..1620)
                     /codon_start=1
                     /protein_id="CDI41127.1"
                     /gene="AC2"
                     /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLH
                     INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPIFHNHQAPTTTIPAEPGHHISPGSIQ
                     SQPEEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
                     /product="Transcriptional Activator Protein"
     gene            complement(1529..2605)
                     /gene="AC1"
     CDS             complement(1529..2605)
                     /codon_start=1
                     /protein_id="CDI41128.1"
                     /gene="AC1"
                     /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFLQTLSLPSNPKFIK
                     ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTNFHPNIQGAKSSSDVKSY
                     LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ
                     FHNLNSNLDRIFQEPPAPYVSPFSCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVI
                     EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNNAWYNVIDDVDPHYLKHFKEFMGS
                     QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKAWALKNAIFIT
                     LTEPLYSGSHQSQSQTIQEASHPA"
                     /product="Replication Associated Protein"
     gene            complement(2161..2571)
                     /gene="AC4"
     CDS             complement(2161..2571)
                     /codon_start=1
                     /protein_id="CDI41129.1"
                     /gene="AC4"
                     /translation="MSFSPTQSVLYPKNTCCHSFKHYLSHQTLSSLKSVESCIRMGNL
                     TCMPSSNSRAKSRLRTIVSSIVYTQAVAPISTPTFKVPNQAQMSSPIWIRTETPSNGG
                     NFRSMDDLLEAVNNQRMMLTPKRLTAAVSQKLLM"
                     /product="AC4 protein"
ORIGIN      
        1 accggttggc cccgccccct ttaaacgtgg tccccgcgca ctacgtatgt cggccaatca
       61 tgctgtagcg ttaaaggtta tttattagtg gtggaccact atatacttac aggcgaagtt
      121 gttgctagtg cgcaatgtgg gatccactgg tgaatgagtt tccagactcg gtgcatgggc
      181 ttaggtgtat gcttgcaatt aaatatttgc aggccttaga ggatacatac gagcccagca
      241 ccttgggcca cgatctggtt cgagatctag tctcagttat cagggctcgt aattatgtcg
      301 aagcgaccag gagatatcat catttccaca ccaggctcga aggttcgtcg aaggctgaac
      361 ttcgacagcc catacaggaa ccgtgctact gcccccactg tccacgtcac aaatcgaaaa
      421 cgggcctggg tgaacaggcc catgtacaga aagcccatga tgtacaggat gtatagaagc
      481 ccagacatac ctaggggctg tgaaggccca tgtaaggtcc agtcgtttga gcagagggat
      541 gatgtgaagc accttggtat ctgtaaggtg attagtgatg tgacacgtgg gcctgggctg
      601 acacacagag tcggaaagag gttttgtatc aagtccattt acattcttgg aaagatctgg
      661 atggatgaaa atattaagaa gcagaatcac acgaataatg tgatgtttta cctgctgagg
      721 gatagaaggc cttatggcaa tacgccccaa gactttgggc agatatttaa catgtttgat
      781 aatgagccca gtactgcaac aatcaagaac gatttgaggg ataggtttca ggtgttgagg
      841 aaatttcatg ccactgttat tggtggtcca tctggcatga aggagcaggc gttggtgaaa
      901 aggttttaca ggttgaatca tcacgtgaca tataatcatc aggaggcagg gaagtacgag
      961 aatcacacag agaatgcttt gcttttgtac atggcatgta ctcatgcctc caatcctgta
     1021 tatgctacgt tgaaaatacg tatatacttc tatgacagta ttggcaatta ataaacattg
     1081 aattttattt catgagtcaa ctgacactca atagtgtttt caagtacatt gaacaaaaca
     1141 tgagcagcag ctctaattac atcgttaatg gagacaacac ctatattatc caagtattta
     1201 agtacttggt atctaaagac ccttaagaaa agaccagtcg gaggccgtaa ggtcgtccag
     1261 atcctgaagt tgagaaaaca tttgtgaatc cccagcgcct tcctcaggtt gtgattgaat
     1321 cgaacctgga ctgatatgat gtcctggttc agcaggaatg gtcgttgttg gtgcctggtg
     1381 attgtgaaat ataggggatt gtttatttcc caggtataca cgccattcat tgcttgagga
     1441 gcagtgatga gttcccctgt gcgtaaatcc atgattggag cagttgatat ggaggtaata
     1501 tgaacagcca cagacaagat ccactctcct acgccggatg gctcgcttct tgaattgtct
     1561 gtgactgact ttgatgggaa cctgagtaga gtggttctgt gagggtgatg aagattgcat
     1621 tctttaatgc ccaggccttt agcgctgctt gcttttcctc gtctaggaac tctttatagg
     1681 acgaggtagg tcctggattg cagaggaaga tagtgggaat gccaccttta atttgaacgg
     1741 gtttcccgta tttcgtgttg gactgccagt ccctctggga ccccatgaat tccttaaagt
     1801 gctttaggta gtggggatcg acgtcatcaa tgacgttgta ccaggcatta ttattgaaga
     1861 cctttggact aaggtccagg tgtccacaca agtaattgtg tgggcctaaa gatctggccc
     1921 atatcgtctt ccctgttctg ctatcacctt ctattacaat actattgggt ctccatggcc
     1981 gcgcagcgga atctctaaca ttatcagcga cccattcttc aagttcatca ggaacttggt
     2041 caaaggaaga acatgagaag ggagaaacat aaggagctgg tggctcctgg aaaatcctat
     2101 ctaaattact atttagatta tggaactgaa gtacaaagtc ctttgggact aattcccgaa
     2161 ttacattaag agcttctgac ttactgccgc tgttaagcgc tttggcgtaa gcatcattcg
     2221 ctgattgttg accgcctcga gcagatcgtc catcgatctg aaattgcccc cattcgacgg
     2281 tgtctccgtc cttatccaga taggacttga catctgagct tgatttggca ccttgaatgt
     2341 tggggtggaa attggtgcta cagcttgggt gtacacaatc gaagagacga ttgttcgtaa
     2401 tcgtgatttt gccctcgaat tggatgaggg catgcaagtg aggttcccca ttctgatgca
     2461 gctctctaca gattttaatg aacttagggt ttgatgggag agatagtgtt tgaaggaatg
     2521 acagcaggtg ttctttgggt atagaacact ttgggtaggt gagaaagaca ttcttggctt
     2581 gaactcgaaa acgaggagtt cgcattttga ctaagtcaat tagagacact caattggaga
     2641 cactcttgag catctcctcc tattaattgg agacattata tagttgtctc caaatggcat
     2701 tcttgtaata aatggaactt taatttgaat taaaagtctc aaaaggcaca gaacacccaa
     2761 ggggccaacc gtataatatt
//