LOCUS       KJ887844                2788 bp    DNA     linear   VRL 24-SEP-2014
DEFINITION  African cassava mosaic virus isolate MG:MG24A1:06 segment A,
            complete sequence.
ACCESSION   KJ887844
VERSION     KJ887844.1
KEYWORDS    .
SOURCE      African cassava mosaic virus
  ORGANISM  African cassava mosaic virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1  (bases 1 to 2788)
  AUTHORS   Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and
            Lefeuvre,P.
  TITLE     Divergent evolutionary histories of Cassava Mosaic Geminiviruses
            in Madagascar
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2788)
  AUTHORS   Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and
            Lefeuvre,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT,
            Saint-Pierre 97410, France
FEATURES             Location/Qualifiers
     source          1..2788
                     /mol_type="genomic DNA"
                     /country="Madagascar"
                     /segment="A"
                     /collection_date="20-Nov-2006"
                     /host="cassava"
                     /db_xref="taxon:10817"
                     /isolate="MG:MG24A1:06"
                     /lat_lon="18.1339 S 49.4067 E"
                     /organism="African cassava mosaic virus"
                     /altitude="11 m"
     gene            140..481
                     /gene="AV2"
     CDS             140..481
                     /codon_start=1
                     /protein_id="AIP88393.1"
                     /gene="AV2"
                     /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD
                     LVSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLDEQA
                     HVQKAHDVQDV"
                     /product="movement protein"
     gene            300..1076
                     /gene="AV1"
     CDS             300..1076
                     /codon_start=1
                     /protein_id="AIP88394.1"
                     /gene="AV1"
                     /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA
                     WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL
                     THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGRIFNM
                     FDNEPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEA
                     GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
                     /product="capsid protein"
     gene            complement(1073..1477)
                     /gene="AC3"
     CDS             complement(1073..1477)
                     /codon_start=1
                     /protein_id="AIP88395.1"
                     /gene="AC3"
                     /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD
                     IITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI
                     NNVIRAADHVLFNVIAKTIECQLTHEIKFNIY"
                     /product="replication enhancer"
     gene            complement(1218..1625)
                     /gene="AC2"
     CDS             complement(1218..1625)
                     /codon_start=1
                     /protein_id="AIP88396.1"
                     /gene="AC2"
                     /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLH
                     INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTVPAEPGHHNSPGSIQ
                     SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
                     /product="transcription activator protein"
     gene            complement(1534..2610)
                     /gene="AC1"
     CDS             complement(1534..2610)
                     /codon_start=1
                     /protein_id="AIP88397.1"
                     /gene="AC1"
                     /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFLQTLSLPSNPKFIK
                     ICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPGCSTSFHPNIQGGKSSSDVKSY
                     LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ
                     FHNLNSNLDRIFQEPPAPYVSPFSCSSFDQVPVEIEDWVADNVRDSAARPWRPNSIVI
                     EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS
                     QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQDALKAWALKNAIFIT
                     LTEPLYSGSNQSQSQTIQEESHPA"
                     /product="replication associated protein"
     gene            complement(2166..2576)
                     /gene="AC4"
     CDS             complement(2166..2576)
                     /codon_start=1
                     /protein_id="AIP88398.1"
                     /gene="AC4"
                     /translation="MSFSHTQSVLYPKNTCCHSFKHSLSHQTLSLLKYVESCIRMGNL
                     TCMPSYNSREKSRLRTIVSSIVYTQAVAPVSTPTFKVANQAPMSSPIWIRTETPSSGD
                     NFRSMDDLLEAVNNQRMMLTPKRLTAAVSQRLLM"
                     /product="C4 protein"
ORIGIN      
        1 accggttggc ccccgccccc cctttaagcg tggtccccgc gcactacgta tgtcggccaa
       61 atatgtgggt agctttaaag gttattttat tagtggtgga ccactatata cttgcagccg
      121 aagttgtagc tagtgcgcta tgtgggatcc actggtgaat gagtttccag actcggtgca
      181 tgggcttagg tgtatgcttg caattaaata tttgcaggcc ttagaggata catacgagcc
      241 cagtacgttg ggccacgatc tggttaggga tctagtctca gttatcaggg ctcgtaatta
      301 tgtcgaagcg accaggagat atcatcattt ccactccagg ctccaaggtt cgtcgaagac
      361 tgaacttcga cagcccatac aggaaccgtg ctactgcccc cactgtccac gtcacaaatc
      421 gaaaacgggc ctggatgaac aggcccatgt acagaaagcc catgatgtac aggatgtata
      481 gaagcccaga catacctagg ggctgtgaag gcccatgtaa ggtccagtcg tttgagcaga
      541 gggatgatgt gaagcacctt ggtatctgta aggtgattag tgatgtgacg cgtgggcctg
      601 ggctgacaca cagggtcgga aagaggtttt gtatcaagtc catttacatt cttggtaaga
      661 tctggatgga tgaaaatatt aagaagcaga atcacactaa taatgtgatt ttttatctgc
      721 ttagggatag aaggccttat ggcaatgcgc cccaagactt tgggcggata tttaacatgt
      781 tcgataatga gcccagtact gcaacaatta agaacgattt gagggatagg tttcaggtgt
      841 tgaggaaatt tcatgccact gttgttggtg gtccatctgg catgaaggag caggctttgg
      901 tgaaaaggtt ttacaggttg aatcatcacg tgacatataa tcatcaggag gcagggaagt
      961 atgagaatca cacagagaat gctttgcttt tgtacatggc atgtactcat gcctccaatc
     1021 ctgtatatgc tacgttgaaa atacgtatat acttctatga cagtattggc aattaataaa
     1081 tattgaattt tatttcatga gtcaactgac attcaatagt ttttgcaatt acattgaaca
     1141 aaacatgatc agcagctcta attacattgt taatggatat aacacctata ttatccaagt
     1201 atttaagtac ttggtatcta aagaccctta agaaaagacc agtctgaggc tgtaaggtcg
     1261 tccagatctt gaagttgaga aaacatttgt gaatccccag ctccttccgc aggttgtgat
     1321 tgaatcgaac ctggactgtt atgatgtcct ggttcagcag gaacggtcgt tgttggtgcc
     1381 tggttattgt gaaatacagg ggattgttta tttcccaggt atacacgcca ttcattgctt
     1441 gaggagcagt gatgagttcc cctgtgcgta aatccatgat tggagcagtt gatatggagg
     1501 taatatgaac agccacaaac aagatccact ctcctacgcc ggatggctct cttcttgaat
     1561 tgtctgtgat tgactttgat tggaacctga gtagagtggt tctgtgaggg tgatgaagat
     1621 tgcattcttt aatgcccagg cctttagcgc gtcttgcttt tcctcgtcca ggaactcttt
     1681 ataggacgag gtaggtcctg gattgcagag gaagatagtg ggaattccac ctttaatttg
     1741 aacgggtttc ccgtatttcg tgttagactg ccagtccctc tgggacccca tgaattcctt
     1801 aaagtgcttt aggtagtggg gatcgacgtc atcaatgacg ttgtaccagg cagcattatt
     1861 gaataccttt ggactaaggt ccaggtgtcc acacaagtaa ttgtgtgggc ctaaagatct
     1921 ggcccatatc gtcttccctg ttctgctatc accttctatg acaatactat taggtctcca
     1981 tggccgcgca gcggaatccc taacattatc agcgacccag tcttcaattt caacaggaac
     2041 ttggtcaaag gaagaacatg agaagggaga aacataagga gctggtggct cctggaaaat
     2101 cctatctaaa ttactattta gattatgaaa ctgaagtaca aagtccttag ggactaattc
     2161 cctaattaca ttaagagcct ctgacttact gccgctgtta agcgctttgg cgtaagcatc
     2221 attcgctgat tgttgaccgc ctctagcaga tcgtccatcg atctgaaatt gtccccactc
     2281 gacggtgtct ccgtccttat ccagatagga cttgacatcg gagcttgatt tgccaccttg
     2341 aatgttgggg tggaaactgg tgctacagcc tgggtgtaca caatcgaaga gacgattgtt
     2401 cgtaatcgtg atttttccct cgaattgtat gagggcatgc aagtgaggtt ccccattctg
     2461 atgcagctct ctacatattt taataaactt agggtttgat gggagagaga gtgtttgaag
     2521 gaatgacagc aggtgttctt tgggtataga acactttggg tatgtgagaa agacattctt
     2581 ggcttgaact ctaaaacgag gagttctcat tttgaccaag tcaattggag acactcaatt
     2641 agagacactc ttgagcatct cctcctgtta attgggagac attatatagg tgtctctaaa
     2701 tggcattctt gtaataagtg gaactttaaa tttgaatgaa aaggctcaaa aggcgcagaa
     2761 cacccaaagg ggccaaccgt ataatatt
//