LOCUS KJ887706 2740 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate MG:MG343B6:11 segment B, complete sequence. ACCESSION KJ887706 VERSION KJ887706.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2740) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2740) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2740 /mol_type="genomic DNA" /country="Madagascar" /segment="B" /collection_date="23-May-2011" /host="cassava" /db_xref="taxon:10817" /isolate="MG:MG343B6:11" /lat_lon="18.7908 S 48.2432 E" /organism="African cassava mosaic virus" /altitude="916 m" gene 433..1203 /gene="BV1" CDS 433..1203 /codon_start=1 /protein_id="AIP87769.1" /gene="BV1" /translation="MYSIRKQSRNVQRKYNSNTTNRYPIRRKYGAGHTRPCVRRRLSY EPVERPLVHNVLCEKQHGDVFNLQQNTSYTSFVTYPSRGSSGDGRSRDYIKLQSMSVS GVIHAKANGNDDPMEFSHVVNGVFVISLIMDTKPYLPAGVQALPTFEELFGPYSACYV NLRLLNNQQHRYRVLHSVKRFVSSSGDTKVYQFRFNKRLSTRRYTIWASFHDGDLGNA GGNYRNISKNAILVSYAFVSEHSMSCDPFVQIETSYVG" /product="nuclear shuttle protein" gene complement(1212..2108) /gene="BC1" CDS complement(1212..2108) /codon_start=1 /protein_id="AIP87770.1" /gene="BC1" /translation="MDTSVPVISGDYIQSARTEYKLTNDESPITLQFPSTLERTRVRI MGKCMKVDHVVIEYRNQVPFNAQGSVIVTIRDTRLSDEQQDQAQFTFPIGCNVDLHYF SASYFSIDDNVPWQLLYKVEDSNVKNGITFAQIKAKLKLSAAKHSTDIKFKQPTIKIL SKDYGPDCVDFWSVGKPKPIRRLIQNEHGTDYDTGPKYRPITVHPGETWATKSTIGRS SSMRYTGPKPIDIDASSSRQYASEAEFPLRGLHQLPEASLDPGDSVSQTQSMSKKDIE SIIEQTVNKCLIAHRGSSHKDL" /product="movement protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gaccccgcgc actggcgacc ccgccccttt 61 taaacgtggt ccccccacct tttctttgtc gtgcgtatac gacggtggtc cccacatgca 121 ggtgttgtct gccattgata ttgcatgtgt gtcccacatg caaataaatg atctgctggc 181 ctatcgaatg acagcttgtg ctactaaatt atatttagta tatgttcatt cctctgaggt 241 taataaaatg gtatatgtta tttagctttt aatattagcc attcgatatt agtgatttat 301 gttcatcaat ctgacaacga ccaagaagga caattaaggc tagtagcgta attcttgatg 361 tattatatat agtgttctaa catacaggag attgtgaaca tcagttattg gaattatata 421 ctgttatctg taatgtatag tatcaggaag cagtctagaa atgtccaaag gaaatataac 481 agcaacacca caaacaggta tccaatcagg cgtaagtatg gtgctgggca tactagacca 541 tgtgttaggc gaagattgtc atatgagcca gtggagagac cgttggtcca taatgtgttg 601 tgtgagaagc aacatggtga tgtgtttaat ttgcagcaga acacaagtta tacgtcattt 661 gtgacttatc cttccagggg atcatctggt gatgggcgta gtcgggatta catcaagttg 721 caaagtatgt ctgtctcggg agtgatacat gcgaaggcta atggcaatga tgatcctatg 781 gagttttctc atgttgttaa tggagtgttc gtgattagct taatcatgga cacaaagcct 841 tatttacctg ctggtgttca agctcttcct acatttgaag agctgtttgg accatattca 901 gcttgttacg ttaatttaag attattgaat aatcaacagc atcgatatag ggtattgcac 961 agcgtgaaac gtttcgtttc atcttcagga gatactaagg tataccaatt taggtttaat 1021 aagcgattaa gcaccaggcg atatactatt tgggcatcat tccatgatgg ggatctggga 1081 aatgcaggtg gaaattatag gaatataagc aagaatgcta ttcttgtcag ttatgctttt 1141 gtatcagagc attcaatgtc ttgtgatcca tttgtacaaa tagaaacatc ctatgttgga 1201 tgatttatta ttcataaatc tttatggcta ctgcctctat gtgctattaa gcacttgttt 1261 acagtttgtt ctataatgct ttcaatgtcc tttttcgaca tggactgtgt ttgtgaaact 1321 gagtcccctg gatctaggga agcttcaggt agctggtgta gtcctctaag tgggaattct 1381 gcctcagatg catactgcct ggaggatgag gcgtcgatgt caattggttt tgggcctgtg 1441 tatctcatgc ttgaagatcg cccaattgtg gattttgtag cccatgtttc tcctggatgg 1501 accgtaatgg gcctatattt aggcccagtg tcataatctg tgccatgctc attctgaatg 1561 agccttcgaa tgggcttagg ttttccaacg gaccagaagt ctacacagtc aggcccatag 1621 tctttggata gtatttttat agtgggctgt ttaaatttaa tgtctgtgga atgtttggca 1681 gctgacagct tcagttttgc cttaatttgg gcaaatgtga ttccattttt tacgtttgaa 1741 tcttcaacct tatacagcag ctgccatggt acgttatcat caattgaaaa gtatgatgca 1801 gagaaataat ggaggtccac attacaccct atgggaaatg tgaattgggc ttgatcctgt 1861 tgctcatcac tgagccgagt gtccctaatg gtaacaataa cagaaccttg tgcattaaat 1921 ggcacttgat tcctgtactc aatgacgaca tggtctacct tcatgcattt gcccatgata 1981 cgtacccttg ttctttcaag ggtcgaagga aattgaagtg taatcggcga ttcatcattc 2041 gtcagtttgt attctgtcct tgctgattga atatagtcgc cggagatgac aggtacagat 2101 gtatccatgt tcaatactgt gataataagc ttgtcaaagc cacaacacct gtcacatgat 2161 aaacatgatg aatctatttg aaaactggcc gcgcagcgga atggctttaa ttcaagataa 2221 atcagaagat tttgtcaaca ggaaataatt ttcaacagga taaacagata ttagaaatat 2281 agacatatat ttcttatcct attggaaaaa agctaatatg tgtaatccaa ttcaaacata 2341 tatatagtca tacagcatta gttgagtaaa cattatatat ttagagatat gtaccttata 2401 ataacttgaa ttggatatcg tcttgagtgg aatgtggata gtcttagtat caaagtggtc 2461 atataaatat gtgttatata tttattaagg agttatccaa cgagtgatag cttacgttgt 2521 cagatttgca tgttcaaatc taaaataagc aattacacta tagtgagaga aagttagaga 2581 gagacgctct caactagaga cactcttgag catctcctcc tgttaattgg agacattata 2641 tagttgtctc taaatggcat tcttgtaata agtggaactt taatttgaat gaaaaggctc 2701 aaaaggctca gaacgcccaa ggggccaacc gtataatatt //