LOCUS KJ887875 2783 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate MG:MG56A1:06 segment A, complete sequence. ACCESSION KJ887875 VERSION KJ887875.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2783) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2783) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2783 /mol_type="genomic DNA" /country="Madagascar" /segment="A" /collection_date="15-Nov-2006" /host="cassava" /db_xref="taxon:10817" /isolate="MG:MG56A1:06" /lat_lon="18.4833 S 47.90 E" /organism="African cassava mosaic virus" /altitude="1331 m" gene 138..479 /gene="AV2" CDS 138..479 /codon_start=1 /protein_id="AIP88573.1" /gene="AV2" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="movement protein" gene 298..1074 /gene="AV1" CDS 298..1074 /codon_start=1 /protein_id="AIP88574.1" /gene="AV1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVVSDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYIACTHASNPVYATLKIRIYFYDSIGN" /product="capsid protein" gene complement(1071..1475) /gene="AC3" CDS complement(1071..1475) /codon_start=1 /protein_id="AIP88575.1" /gene="AC3" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI NNVITAADHVLFNVIAKTIECQLTHEIKFNIY" /product="replication enhancer" gene complement(1216..1623) /gene="AC2" CDS complement(1216..1623) /codon_start=1 /protein_id="AIP88576.1" /gene="AC2" /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLH LNCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTVPAEPGHHNSPGSLQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcription activator protein" gene complement(1532..2608) /gene="AC1" CDS complement(1532..2608) /codon_start=1 /protein_id="AIP88577.1" /gene="AC1" /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCIHPGCSTSFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGQHSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFSCSSFDQVPVEIEEWVADNVRDSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQDALKAWALKNAIFIT LTEPLYSGSNQSQSQTIQEESHPA" /product="replication associated protein" gene complement(2164..2574) /gene="AC4" CDS complement(2164..2574) /codon_start=1 /protein_id="AIP88578.1" /gene="AC4" /translation="MSFSHTQSVLYPKNTCCHSFKHSLSHQTLSLLKSVESCIRMGNL TCMPSYNSREKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTETPSSGD NFRSMDDLLEAVNTQRMMLTPKRLTAAVSQRLLM" /product="C4 protein" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatt 61 atgttgtagc tttaaagggt tattttatta gtggtggacc actatatact tgcaggcgaa 121 gttgtagcta gtgcgctatg tgggatccac tggtgaatga gtttccagac tcggtgcatg 181 ggcttaggtg tatgcttgca attaaatatt tgcaggcctt agaggataca tacgagccca 241 gtactttggg ccacgatctg gttagggatc tagtctcagt tatcagggct cgtaattatg 301 tcgaagcgac caggagatat catcatttcc actccaggct ccaaggttcg tcgaagactg 361 aacttcgaca gcccatacag gaaccgtgct actgccccca ctgtccacgt cacaaatcga 421 aaacgggcct ggatgaacag gcccatgtac agaaagccca tgatgtacag gatgtataga 481 agcccagaca tacctagggg ctgtgaaggc ccatgtaagg tccaatcgtt tgagcagagg 541 gatgatgtga agcaccttgg tatctgtaag gtggttagtg atgtgacgcg tgggcctggg 601 ctgacacaca gggtcggaaa gaggttttgt atcaagtcca tttacattct tggtaagatc 661 tggatggatg aaaatattaa gaagcagaat cacactaata atgtgatttt ttacctgctt 721 agggatagaa ggccttatgg caatgcgccc caagactttg ggcagatatt taacatgttt 781 gataatgagc ccagtactgc aacaattaag aacgatttga gggataggtt tcaggtgttg 841 aggaaatttc atgccactgt tgttggtggt ccatctggca tgaaggagca ggctctggtg 901 aaaaggtttt acaggttgaa tcatcacgtg acatataatc atcaggaggc agggaagtat 961 gagaatcaca cagagaatgc tttgcttttg tacattgcat gtactcatgc ctccaatcct 1021 gtatatgcta cgttgaaaat acgtatatac ttctatgaca gtattggcaa ttaataaata 1081 ttgaatttga tttcatgagt caactgacat tcaatagttt ttgcaattac attgaacaaa 1141 acatgatcag cagctgtaat tacattatta attgagataa cacctatatt atccaagtat 1201 ttaagtactt ggtatctaaa gacccttaag aaaagaccag tctgaggctg taaggtcgtc 1261 cagatcctga agttgagaaa acatttgtga atccccagct ccttccgcag gttgtgattg 1321 aagcgaacct ggactgttat gatgtcctgg ttcagcagga acggtcgttg ttggtgcctg 1381 gttattgtga aatacagggg attgtttatt tcccaggtat acacgccatt cattgcttga 1441 ggagcagtga tgagttcccc tgtgcgtaaa tccatgattg gagcagttga gatggaggta 1501 atatgaacag ccacagacaa gatccactct cctacgccgg atggctctct tcttgaattg 1561 tctgtgattg actttgattg gaacctgagt agagtggttc tgtgagggtg atgaagattg 1621 cattctttaa tgcccaggcc tttagcgcgt cttgcttttc ctcgtccagg aactctttat 1681 aggacgaggt aggtcctgga ttgcagagga agatagtggg aattccacct ttaatttgaa 1741 cgggtttccc gtatttcgtg ttagactgcc agtccctttg ggaccccatg aattccttaa 1801 agtgctttag gtagtgggga tcgacgtcat caatgacgtt gtaccaggca gcattattga 1861 atacctttgg actaaggtcc aggtgtccac acaagtaatt gtgtgggcct aaagatctgg 1921 cccatatcgt cttccctgtt ctgctatcac cttctatgac aatactatta ggtctccatg 1981 gccgcgcagc ggaatcccta acattatcag cgacccattc ttcaatttca acaggaactt 2041 ggtcaaagga agaacatgag aagggagaaa cataaggagc tggtggctct tggaaaatcc 2101 tatctaaatt actatttaga ttatgaaact gaagtacaaa gtcctttggg actaattccc 2161 gaattacatt aagagcctct gacttactgc cgctgttaag cgctttggcg taagcatcat 2221 tcgctgagtg ttgaccgcct ctagcagatc gtccatcgat ctgaaattgt ccccactcga 2281 cggtgtctcc gtccttatcc agataggact tgacatctga gcttgatttg gcaccttgaa 2341 tgttggggtg gaaactggtg ctacagcctg ggtgtataca atcgaagaga cgattgttcg 2401 taatcgtgat ttttccctcg aattgtatga gggcatgcaa gtgaggttcc ccattctgat 2461 gcagctctct acagatttta ataaacttag ggtttgatgg gagagagagt gtttgaatga 2521 atgacagcag gtgttctttg ggtatagaac actttgggta tgtgagaaag acattcttgg 2581 cttgaactct aaaacgagga gttctcattt tgaccaagtc aattggagac actcaactag 2641 agacactctt cagcatctcc tcctgttaat tggagacatt atataggtgt ctctaaatgg 2701 cattcttgta ataagttgaa ctttaatttg aattaaaagg ctcaaaaggc gcagaacacc 2761 caaagggcca accgtataat att //