LOCUS KJ887744 2738 bp DNA linear VRL 24-SEP-2014 DEFINITION African cassava mosaic virus isolate MG:MG688B1:11 segment B, complete sequence. ACCESSION KJ887744 VERSION KJ887744.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2738) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Divergent evolutionary histories of Cassava Mosaic Geminiviruses in Madagascar JOURNAL Unpublished REFERENCE 2 (bases 1 to 2738) AUTHORS Hoareau,M., Harimalala,M., Zinga,I., De Bruyn,A., Lett,J.-M. and Lefeuvre,P. TITLE Direct Submission JOURNAL Submitted (23-MAY-2014) UMR PVBMT, CIRAD, 7 chemin de l'IRAT, Saint-Pierre 97410, France FEATURES Location/Qualifiers source 1..2738 /mol_type="genomic DNA" /country="Madagascar" /segment="B" /collection_date="06-Jul-2011" /host="cassava" /db_xref="taxon:10817" /isolate="MG:MG688B1:11" /lat_lon="12.6989 S 49.2548 E" /organism="African cassava mosaic virus" /altitude="499 m" gene 433..1203 /gene="BV1" CDS 433..1203 /codon_start=1 /protein_id="AIP87844.1" /gene="BV1" /translation="MYSIRKQSRNFQRKFNSNTTNRYPIRRKYGAGHTRLCVRRRLSY EPVERPLVHNVLCEKQHGDVFNLQQNTSYTSFVTYPSRGSSGDGRSRDYIKLLSMSVS GVIHAKANGNDDPMEMSPVVNGVFVFSLIMDTKPYLPAGVQALPTFEELFGPYSACYV NLRLLNNQQHRYRVLHSVKRFVSSSGDTKVSQFRFNKRLSTRRYTIWASFHDGDLGNA GGNYRNVSKNAILVSYAFVSEHSMSCDPFVQIETSYVG" /product="nuclear shuttle protein" gene complement(1212..2108) /gene="BC1" CDS complement(1212..2108) /codon_start=1 /protein_id="AIP87845.1" /gene="BC1" /translation="MDTSVPVISGDYIQSARTEYRLTNDESPITLQFPSTLERTRVRI MGKCMKVDHVVIEYRNQVPFNAQGSVIVTIRDTRLSDEQQDQAQFTFPIGCNVDLHYF SASYFSIDDNVPWQLLYKVEDSNVKHGITFAQIKAKLKLSAAKHSTDIKFKQPTIKIL SKDYGPDCVDFWSVGKPKPIRRLIQNEHSTDYDTGPKYRPITVHPGETWATKSTIGRS SSMRYTGPKPIDIDASSSRQYASEAEFPLRGLHQLPEASLDPGDSVSQTQSMSKKDIE SIIEQTVNKCLIAHRGRSHKDL" /product="movement protein" ORIGIN 1 accggttggc cccgcccctt taaacgtgga ccccgcgcac tggtgacccc gcccctttag 61 aacgtggtcc ccctacctct tttctttgtc ctgcgtgtac gacggtggtc cccacatgca 121 ggtgttgtct gccatagata ttgcatgtgt gtcccacatg caaataaatt atttgctggc 181 ctatcgaatg acagtttgtg ctactaaatt atatttagta tatgtgcatt cctcggagtt 241 taaaaaaatg gtatatgtta cgtagcgttt aacattagcc attcgatagt agtgatttat 301 ggtcatcaat ctgacaacga ccaagaagga caattaaggc tagtagcgta atcgttgatg 361 tattatatat agagttctaa catacaggag atcgtgaata tcggttattg gaattatata 421 caggcagctg taatgtatag tatcaggaag cagtctagaa atttccaaag gaaatttaac 481 agcaacacca caaacaggta tccaatcagg cgtaagtatg gtgctgggca tactagatta 541 tgtgttaggc gaagattgtc atatgagcca gtggagcgac cgttggtcca taatgtgttg 601 tgtgagaagc aacatggtga tgtgtttaat ttgcaacaga acacaagtta tacgtcattt 661 gtgacttatc cttccagggg gtcatctggt gatgggcgta gtcgggatta catcaagttg 721 ctaagtatgt ctgtctcggg agtgatacat gcgaaggcta atggcaatga tgatcctatg 781 gagatgtctc ctgttgttaa tggagtgttc gtgtttagct taatcatgga cacaaagcct 841 tatttacccg ctggtgtgca agcgcttcct acatttgaag agctgtttgg accatattca 901 gcttgttacg ttaatttaag attattgaat aatcaacagc atcgatatag ggtattgcac 961 agcgtgaaac gtttcgtttc atcttcagga gatactaagg tatctcaatt taggtttaat 1021 aagcgattaa gcaccaggcg atatactatt tgggcatcat tccatgatgg ggatctggga 1081 aatgcaggtg gaaactatag gaatgtaagc aagaatgcta ttcttgtcag ttatgctttt 1141 gtatcagagc attcaatgtc ttgtgatcca tttgtacaaa tagaaacatc ctatgttgga 1201 tgatttatta ttcataaatc tttatggcta cggcctctat gtgctattaa gcacttgttt 1261 acagtttgtt ctataatgct ttcaatgtcc tttttcgaca tggactgtgt ttgtgaaact 1321 gagtctcctg gatctaggga agcttcaggt agctggtgta gtcctctaag tgggaattct 1381 gcctcagatg catattgcct ggaggatgag gcgtcgatat caattggttt tgggccggtg 1441 tatctcatgc ttgaagatcg cccaattgtg gattttgtag cccatgtttc gcctggatgg 1501 accgtaatgg gcctatattt aggcccagtg tcataatctg tgctgtgctc attctgaatg 1561 agccttcgaa tgggcttagg ttttccaacg gaccagaagt ctacacagtc aggcccgtag 1621 tctttggata gtatttttat agtgggctgt ttaaatttaa tgtctgtgga atgtttggca 1681 gctgacagct tcagttttgc cttaatttgg gcaaatgtga ttccatgttt tacgtttgaa 1741 tcttcaacct tatacagcag ctgccatggt acgttatcat caattgaaaa gtatgatgca 1801 gagaaataat ggaggtccac attacaccct atgggaaatg tgaattgggc ttgatcctgt 1861 tgctcatcac tgagcctagt gtccctaatg gtaacaataa cagaaccttg tgcattaaat 1921 ggcacttgat tcctgtactc aatgacgaca tggtctacct tcatgcattt gcccatgata 1981 cgtacccttg ttctttcaag ggtcgaagga aattgaagtg taatcggcga ttcatcattc 2041 gtcagtctgt attctgtcct tgctgattga atatagtcgc cggagatgac aggtacagat 2101 gtatccatgt tcaacactgt gattataagc ttgtcaaagc cacaacacct gtcacatgat 2161 aaacatgatt aatctattgg aaaactggcc gcgcagcgga atggctttaa tgcaagataa 2221 accagaagaa tttgtcaaca ggaaataatg tgcaacagga gaaacagatg ttagaaatat 2281 agacatatat ttcttatcct attggaaaaa agcactatgt gtaagccaat tcaaacagtt 2341 atatatacat acagaattag ttgagtaaac attacatatt tagagatagt accttataat 2401 aacgtgaatt ggatatcgtc ttgagtggaa tgtggatagt cgtattatca aagtgggcat 2461 ataaatacgt gttatatatt tattaaggag ttatccaacg agggatagct tacgttgaca 2521 gatttgcatg ttcaaatcta aaataagcaa ttacactata gtgagagaaa gttagagaga 2581 gacgctctca actggagaca ctcttgagca tctcctcctg ttaattggag acattatata 2641 gttgtctcta aatggcattc ttgtaataag tgtaacttta atttgaatga aaaggctcaa 2701 aaggcgcaga acgcccaagg ggccaaccgt ataatatt //