LOCUS KT869130 2768 bp DNA linear VRL 24-JUL-2016 DEFINITION African cassava mosaic virus isolate ZM-N449-B3 segment DNA-A, complete sequence. ACCESSION KT869130 VERSION KT869130.1 KEYWORDS . SOURCE African cassava mosaic virus ORGANISM African cassava mosaic virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2768) AUTHORS Mulenga,R.M., Legg,J.P., Ndunguru,J., Miano,D.W., Mutitu,E.W., Chikoti,P.C. and Alabi,O.J. TITLE Survey, molecular detection and characterization of geminiviruses associated with cassava mosaic disease in Zambia JOURNAL Plant Dis. 100 (7), 1379-1387 (2016) REFERENCE 2 (bases 1 to 2768) AUTHORS Mulenga,R.M., Legg,J.P., Miano,D.W., Ndunguru,J., Chikoti,P.C. and Alabi,O.J. TITLE Direct Submission JOURNAL Submitted (02-OCT-2015) Department of Plant Pathology & Microbiology, Texas A&M AgriLife Research and Extension Center, 2401 E. Hwy. 83, Weslaco, TX 78596, USA COMMENT ##Assembly-Data-START## Assembly Method :: BioEdit Sequence Alignment Editor v. 7.2.3 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2768 /mol_type="genomic DNA" /country="Zambia" /isolation_source="leaves" /segment="DNA-A" /collection_date="2014" /host="Manihot esculenta (cassava)" /db_xref="taxon:10817" /isolate="ZM-N449-B3" /organism="African cassava mosaic virus" CDS 137..478 /codon_start=1 /protein_id="ANT83113.1" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFNSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="AV2" /note="pre-coat protein" CDS 297..1073 /codon_start=1 /protein_id="ANT83114.1" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALRLYMACTHASNPVYATLKIRIYFYDSIGN" /product="AV1" /note="coat protein; CP" CDS complement(327..1007) /codon_start=1 /protein_id="ANT83119.1" /translation="MRTCHVQTQSILCVILVLPCLLMIICHVMIQPVKPFHQRLLLHA RWTTNNSGMEFPQHLKPIPQIILNCCSTGLVIKHVKYLPKVLGRIAIRPSIPKQVKYH IISVILLLNIFIHPDLTEYVNGLDTKPLSDPVCQPRPTSHITNHLTDTKVLHIIPLLK RLDLTWAFTAPRYVWASIHPVHHGLSVHGPVHPGPFSICDVDSGGSSTVPVWAVEVQP STNLGAWS" /product="AC5" /note="AC5 protein" CDS complement(1070..1474) /codon_start=1 /protein_id="ANT83117.1" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKVLGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNMGVISI NNVIRAADHVLFNVIAKTIECQLTHEIKFNIY" /product="AC3" /note="replication enhancer protein; REn" CDS complement(1215..1622) /codon_start=1 /protein_id="ANT83116.1" /translation="MQSSSPSQNHSTPVPIKVSHRQFKKRAVRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPAEPGHHNSPGSIQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKSL" /product="AC2" /note="transcriptional activator protein; TrAP" CDS complement(1531..2592) /codon_start=1 /protein_id="ANT83115.1" /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFLQTLSLPSNPKFIK ICRELHRNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTGFHPNIQGAKSSSDVKSY LDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIKELVPKDFVLQ FHNLNSNLDRIFQEPPAPYVSPFSCSSFDQVPVELEEWVADNVRDSAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFTNDAWYNVIDDVDPLKEFMGAQRDWQ SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPL YSGSNQSQSPTIQEESRQA" /product="AC1" /note="replication-associated protein; Rep" CDS complement(2148..2558) /codon_start=1 /protein_id="ANT83118.1" /translation="MSFSHTQSVLYPKNTCCHSFKHSLSHRTLSSLKSAESCIGMENL TCMHSSNSREKSRSRTIVSSIVYTQAVAPVSTPTFKVPNPAQMSSPIWIRTETPSNGD NFRSMDDLLEAVNNQRMMLTPKRLTAAVSQKLLM" /product="AC4" /note="AC4 protein" ORIGIN 1 accggttggc ccccgccccc ctttaaacgt ggtccccgcg cactacgtct gtcggccaat 61 catgtggtat cttgaaaggt tatgtattag tggtgggcca ctatatactt gcaggcgaag 121 tcgttggtag tgcgcaatgt gggatccact ggtgaatgag tttccagact ctgtgcatgg 181 gcttaggtgt atgcttgcaa ttaaatattt gcaggcctta gaggatacat acgagcccag 241 tactctgggc cacgatctgg ttagggatct agtctccgtt attagagctc gtaattatgt 301 cgaagcgacc aggagatatc atcatttcaa ctccaggctc caaggttcgt cgaaggctga 361 acttcgacag cccatacagg aaccgtgcta ctgcccccac tgtccacgtc acaaatcgaa 421 aacgggcctg gatgaacagg cccatgtaca gaaagcccat gatgtacagg atgtatagaa 481 gcccagacat acctaggggc tgtgaaggcc catgtaaggt ccagtcgttt gagcagaggg 541 atgatgtgaa gcaccttggt atctgtaagg tgattagtga tgtgactcgt gggcctgggt 601 tgacacacag ggtcggaaag aggttttgta tcaagtccat ttacatactc ggtaagatct 661 ggatggatga aaatattaag aagcagaatc acactaataa tgtgatattt tacctgctta 721 gggatagaag gccttatggc aatgcgcccc aagactttgg gcagatattt aacatgtttg 781 ataacgagcc cagtactgca acaattaaga atgatttgag ggataggttt caggtgttga 841 ggaaattcca tgccactgtt gttggtggtc catctggcat gaaggagcag gcgttggtga 901 aaaggtttta caggttgaat catcacgtga catataatca tcaggaggca gggaagtacg 961 agaatcacac agagaatgct ttgcgtctgt acatggcatg tacgcatgcc tccaatcctg 1021 tatatgctac gttgaaaata cgtatatact tctatgacag tattggcaat taataaatat 1081 tgaattttat ttcatgagtc aactgacact caatagtttt ggctattaca ttgaacaaaa 1141 catgatcagc agctctaatt acattgttaa ttgagataac acccatatta tccaagtatt 1201 taagtacttg gtatctaaag actcttaaga aaagaccagt ctgaggctgt aaggtcgtcc 1261 agatcctgaa gttgagaaaa catttgtgaa tccccagcac cttccgcagg ttgtgattga 1321 atcgaacctg gactgttatg atgtcctggt tcagcaggaa tggtcgttgt tggtgcctgg 1381 tgattgtgaa atacagggga ttgtttattt cccaggtata cacgccattc attgcttgag 1441 gagcagtgat gagttcccct gtgcgtaaat ccatgattgg agcagttgat atggaggtaa 1501 taggaacagc cacagacaag atccactctc ctacgcctga cggctctctt cttgaattgt 1561 cggtgactga ctttgattgg aaccggagta gagtggttct gtgagggtga tgaagattgc 1621 attctttaat gcccaggcct ttagtgcttc ttgcttttcc tcgtctagga actctttata 1681 ggacgaggta ggtcctggat tgcagaggaa gatagtggga atgccacctt taatttgaac 1741 gggtttcccg tatttcgtgt tggactgcca gtccctctgg gcccccatga attccttaag 1801 ggggtcgacg tcatcaatga cgttgtacca ggcatcatta gtgaagacct ttggactaag 1861 gtccaggtgt ccacacaggt aattgtgtgg gcctaaagat ctggcccata tcgtctttcc 1921 tgttctgcta tcaccttcta tgacaatact attgggtctc catggccgcg cagcggaatc 1981 cctaacatta tcagcgaccc attcttcaag ttcaacagga acttggtcaa aggaagaaca 2041 tgagaaggga gaaacataag gagctggtgg ctcctggaag atcctatcta aattactatt 2101 tagattatga aactgaagta caaagtcctt tgggactaat tccttaatta cattaagagc 2161 ttctgactta ctgccgctgt taagcgcttt ggcgtaagca tcattcgctg attgttgacc 2221 gcctctagca gatcgtccat cgatctgaaa ttgtccccat tcgacggtgt ctccgtcctt 2281 atccagatag gacttgacat ctgagctgga tttggcacct tgaatgttgg ggtggaaacc 2341 ggtgctacag cttgggtgta cacaatcgaa gagacgattg ttcgtgatcg tgatttttcc 2401 ctcgaattgg atgagtgcat gcaagtgagg ttctccattc cgatgcagct ctctgcagat 2461 tttaatgaac ttagggttcg atgggagaga gagtgtttga aggaatgaca gcaggtgttc 2521 tttgggtata gaacactttg ggtatgtgag aaagacattc ttggcttgaa ctcgaaaacg 2581 aggagttctc attttgacca agtcaattgg agacactcaa ctagagacac tcttgagcat 2641 ctcctcctgt taattggaga cattatatag gtgtctctaa atggcattct tgtaataagt 2701 ataactttaa tttgaatgaa aaggctcaaa aggctcagaa caccccaagg ggccaaccgt 2761 ataatatt //