LOCUS FJ751234 2781 bp DNA circular VRL 28-AUG-2012 DEFINITION African cassava mosaic virus-cotton clone ACMV-Lob1, complete genome. ACCESSION FJ751234 VERSION FJ751234.1 KEYWORDS . SOURCE African cassava mosaic virus-cotton ORGANISM African cassava mosaic virus-cotton Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2781) AUTHORS Nawaz-Ul-Rehman,M.S., Briddon,R.W. and Fauquet,C.M. TITLE A melting pot of old world begomoviruses and their satellites infecting a collection of gossypium species in pakistan JOURNAL PLoS ONE 7 (8), E40050 (2012) PUBMED 22899988 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2781) AUTHORS Khan,M. and Fauquet,C. TITLE African cassava mosaic virus DNA-A component infects non-cultivated exotic cotton species in Pakistan JOURNAL Unpublished REFERENCE 3 (bases 1 to 2781) AUTHORS Khan,M. and Fauquet,C. TITLE Direct Submission JOURNAL Submitted (13-FEB-2009) ILTAB, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis, MO 63132, USA FEATURES Location/Qualifiers source 1..2781 /mol_type="genomic DNA" /country="Pakistan" /collected_by="Muhammad Shah Nawaz Khan" /collection_date="Mar-2008" /host="Gossypium lobatum" /db_xref="taxon:685973" /clone="ACMV-Lob1" /organism="African cassava mosaic virus-cotton" gene 136..477 /gene="CP" CDS 136..477 /codon_start=1 /protein_id="ACZ74634.1" /gene="CP" /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRD LVSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQA HVQKAHDVQDV" /product="coat protein" /note="AV1" gene 296..1072 /gene="AV2" CDS 296..1072 /codon_start=1 /protein_id="ACZ74633.1" /gene="AV2" /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRA WMNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGL THRVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNM FDNEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEA GKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" /product="AV2" gene complement(1069..1473) /gene="REn" CDS complement(1069..1473) /codon_start=1 /protein_id="ACZ74637.1" /gene="REn" /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQD IITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISI NHVIRAADHVLFNVIEKTIACQLTHEIKFNIY" /product="replication enhancer protein" /note="AC3" gene complement(1214..1621) /gene="TrAP" CDS complement(1214..1621) /codon_start=1 /protein_id="ACZ74636.1" /gene="TrAP" /translation="MQSSSPSQNHSTQFQSKSVTDNSRSEPSRRRRVDLVCGCSYYLH INCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQ SQPAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" /product="transcriptional activator protein" /note="AC2" gene complement(1530..2606) /gene="Rep" CDS complement(1530..2606) /codon_start=1 /protein_id="ACZ74635.1" /gene="Rep" /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIK ICRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSY LDKDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQ FHNLNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVI EGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGS QRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFIT LTEPLYSVPIKVSHRQFKKRAIPA" /product="replication-associated protein" /note="AC1" gene complement(2150..2452) /gene="AC4" CDS complement(2150..2452) /codon_start=1 /protein_id="ACZ74638.1" /gene="AC4" /translation="MGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQ AQMSSHTWIRTATPSNGDDFRSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN" /product="AC4" ORIGIN 1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 61 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 121 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg 181 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 241 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 361 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 421 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 481 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 541 tgatgttaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 601 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg gtaagatctg 661 gatggatgaa aatattaaga agcagaatca cactaataat gtgatgtttt acctgcttag 721 ggatagaagg ccttatggca atacgcccca agactttggg cagatattta acatgtttga 781 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 841 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa 901 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga 961 gaatcacaca gagaatgcgt tgcttttgta catggcatgt actcatgcct ccaatcctgt 1021 atatgctacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaatatt 1081 gaattttatt tcatgagtca actgacacgc aatagttttt tcaattacat tgaacaaaac 1141 atgatcagca gctctaatta catggttaat tgagataaca cctatattat ccaagtattt 1201 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca 1261 gatcctgaag ttgagaaaac atttgtgaat ccccagctcc ttccgcaggt tgtgattgaa 1321 tcgaacctgg actgttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt 1381 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1441 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1501 atgaacagcc acagacaaga tccactctcc tacgccggga tggctcgctt cttgaattgt 1561 ctgtgactga ctttgattgg aactgagtag agtggttctg tgagggtgat gaagattgca 1621 ttctttaatg cccaggcctt tagcgcttct tgcttttcct cgtctaggaa ctctttatag 1681 gacgaggttg gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1741 ggtttcccgt attttgtgtt ggactgccag tcccgctggg accccatgaa ttccttaaag 1801 tgctttaggt agtgtggatc gacgtcatca atgacgttgt accaagcagc attattgaag 1861 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc 1921 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1981 cgcgcagcgg aagccctaac attatcagcg acccattctt caagttcatc aggaacttgg 2041 tcaaaggaag aacatgggaa gggagaaata taaggagctg gtggctcctg gaaaatcctt 2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac taattcccta 2161 atgacattaa gagcttctga cttactgccg ctgttaagcg ctttggcgta agcatcattt 2221 gcggactgtt gacctcctct agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg 2281 gtgtcgccgt ccttatccag gtatgacttg acatctgagc ttgatttggc accttgaatg 2341 ttggggtgga aactggtgct acagcttggg tgtagacaat cgaagagacg attgttcgta 2401 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2461 agctctctac agattttaat gaacttaggg ttagatggga gagagagtgt ttgaatgaat 2521 gacagcaggt gttctttggg gatagaacac tttgggtatg tgagaaagac attcttggct 2581 tgaactctaa aacgaggagt cctcattttg accaagtcaa ttggagacac tcaactagag 2641 acactcttga gcatctcctc ctgttaattg gagacattat ataggtgtct ctaaatggca 2701 ttcttgtaat aagttaaact ttaatttgaa tgaaaagcct caaaaggcgc ataacaccca 2761 aggggccaac cgtataatat t //