LOCUS FJ011109 2791 bp RNA linear VRL 21-MAY-2009 DEFINITION African horse sickness virus 1 VP3 gene, complete cds. ACCESSION FJ011109 VERSION FJ011109.1 KEYWORDS . SOURCE African horse sickness virus 1 ORGANISM African horse sickness virus 1 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 2791) AUTHORS Potgieter,A.C., Page,N.A., Liebenberg,J., Wright,I.M., Landt,O. and van Dijk,A.A. TITLE Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes JOURNAL J. Gen. Virol. 90 (PT 6), 1423-1432 (2009) PUBMED 19264638 REFERENCE 2 (bases 1 to 2791) AUTHORS Potgieter,A.C., Page,N.A., Liebenberg,J. and van der Sluis,R. TITLE Direct Submission JOURNAL Submitted (12-AUG-2008) Virology, ARC-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, Pretoria, Gauteng 0110, South Africa COMMENT GenBank Accession Numbers FJ011107-FJ011116 represent sequences from the 10 segments of African horse sickness virus 1. FEATURES Location/Qualifiers source 1..2791 /mol_type="genomic RNA" /country="South Africa" /segment="3" /collection_date="11-Jun-1962" /host="Equus caballus" /note="reference strain; passaged once in adult mice and once in suckling mice" /db_xref="taxon:33714" /organism="African horse sickness virus 1" CDS 27..2744 /codon_start=1 /protein_id="ACH92679.1" /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQ KIRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTE YVLQVNTFYERMSEIGGPVDETDPIGFYALILEKLKFLKSEGAFILQGIATKDYRGAE IADPEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYR IHNVLQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPI NANVIWNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLT PTAVQMNDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTN ITPTMAELLDAALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRADPQTG RGYNGWGVVDVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRML VAAGKDQEAAYLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNLIQGNFG ETDPVVLEVSWASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMM RARVPDTVINATPSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDIQES LAYVLNREAWAIANDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFHTNMIDGAP PIGDVTHYTYAIANLQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEI LTAMPYVYTEEERDGVRMVAFKYATTATAYFLLYNVEYSNTPDTLITVNPTFTMTKIH MRKKIVRRVRAPDVLSQVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" /product="VP3" ORIGIN 1 gtttattttc tgctgtgaac tccagaatgc aagggaatga gagaatacaa gataaaaatg 61 agaaggagaa ggcgtatgca ccatatcttg acggagcgag cgtatcaacg gataatgggc 121 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa aattaggcaa aatcagagcg 181 atatggctgc acatgctccc gatgttgatg gggcgatacc agaggtaatg actataatca 241 gtggaattaa gggattgcta gaagaaaagg attacaaagt aataaacgcg ccaccgaatt 301 cttttcgcac gatcccgatg cagagtacgg agtatgtttt gcaagtgaac acgttttatg 361 agaggatgtc ggaaattgga gggccggtgg atgaaacgga tccaattgga ttttatgcat 421 tgatactgga gaaattgaaa tttttgaaat ccgagggggc tttcatcttg caggggatag 481 ctactaaaga ttataggggt gcagagatcg cagatccaga gataatcggg gttagcttcc 541 aaaatgcttt gagtcatttg gcggcaatag atcgtcaaat catacaggat actctcaacg 601 ggatgatcat tgaaaatgga ttagtggcag atagaaatgt ggatgtgttt agagcggcga 661 tgtcggaccc aatctatcgg atacacaatg tattacaagg atatattgaa ggtatacaat 721 atggggagtt gcgtgaatcg gtcaattggt tgatgaggct tggactaagg aagagaatcg 781 agtttgccaa cgatttcttg actgatttta gacgcgcgga cactatttgg ataatatcac 841 aaaggttacc gattaatgct aatgtaattt ggaatgttcc aagatgccat atagcaaatc 901 taatcacaaa tgtcgcgtta tgcttaccaa ctggagagta tttgatgccc aacccaagaa 961 ttaattcgat cacaatcaca cagcgtatca ctcagactaa tccattttca ataatttcag 1021 ggttaacccc gacagcggtt caaatgaatg atgttagaaa aatatatctt gcattaatgt 1081 ttcccaacca aattattctg gatataaaac cagacagctc gcatgcggta gatccagttt 1141 tgcgaatggt tgcgggagta ttgggccatg taatgtttac ttacggaccg atcatgacaa 1201 acataactcc aacgatggct gaattgcttg atgctgcgct gagcgattat ttattgtaca 1261 tgtataacaa tcggattcct ataaattacg gtccaacagg tcaaccccta gattttcgca 1321 ttggagcaag aaatcagtat gattgtaacg ctttccgagc ggacccacaa acgggtcgag 1381 gttacaacgg gtggggggtg gttgatgttc agagagtcca gccgagtcca tatgatcatg 1441 ttcaacgtgt aatccgttac tgtgacattg attcaaggga gatyatagat ccaagaactt 1501 atgggatgaa tatgacatat ccaatatttc gggaaatgct tagaatgcta gttgctgcgg 1561 gaaaagatca agaagcagct tatttgagac agatgctgcc ttttcatatg attcgtttcg 1621 cgcgaataaa tcaaattata aatgaagatt tgctcagtgc tttctctctg ccagatcaga 1681 atttcgatgt agttctacac aacttgatac aaggtaattt tggagaaacg gatccggtag 1741 ttttggaggt gagttgggct tcgatctggt tcgccttcgt gaggcgtttc gaacccatcg 1801 cccgttcaga tttacttgag gcagctcctc tgattgaagc tagatatgca gctgaattat 1861 ccacgatgca gatggatgta cagcagctga ggatgatgcg agccagagtc ccggacactg 1921 tgattaatgc gacgccaagt caatgctgga aagcggtttt gaagaatgcg ccagagccaa 1981 ttaaaaattt aatgaacttg tctcattctt tcagttttgt gaatgtacga gatattgtaa 2041 ggtggagtca acagagggac attcaggagt cgttggcgta tgttttgaat agggaagctt 2101 gggcgattgc taatgacttt gaagacttga tgttagtgga tcacgtgtat atacagcgca 2161 cgatgttacc tgaacctagg ttagacgata tcaacgagtt taggcggcaa ggattcttcc 2221 atacgaatat gatcgatgga gcgccaccaa ttggagatgt tactcactac acctatgcga 2281 ttgcaaatct acaggcgaat atgggacagt tcagagcggc gatcaggcgt acactggatg 2341 ataacggttg gattcagttt ggtggtatgt tacggaatat caagattaaa ttttttgatt 2401 cgcggccgcc cgacgagata ctgacggcaa tgccttatgt gtacacggag gaggagaggg 2461 atggagtgag gatggtcgct tttaaatacg cgacaaccgc gactgcctat ttcttattgt 2521 ataacgttga gtattcaaat acgccagata ctttgatcac agtgaaccca acatttacga 2581 tgacgaaaat tcatatgcga aagaaaattg tcagacgagt tcgcgctcca gatgtgctat 2641 cacaagttaa caaacgttta gtcgcgtaca aaggtaagat gcgcttaatg gatgtaacga 2701 aatgcctaaa gactggagtt caactcgcgc gaccaacgat ttagcagcct gaccacctgg 2761 tgaatcgttc tagcgggcag attacactta c //