LOCUS KP939368 3965 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 1 isolate AHSV-1_107_09 segment 1, complete sequence. ACCESSION KP939368 VERSION KP939368.1 KEYWORDS . SOURCE African horse sickness virus 1 ORGANISM African horse sickness virus 1 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /country="South Africa" /segment="1" /collection_date="23-Oct-2009" /db_xref="taxon:33714" /isolate="AHSV-1_107_09" /organism="African horse sickness virus 1" gene 14..3931 /gene="VP1" CDS 14..3931 /codon_start=1 /protein_id="ALM00132.1" /gene="VP1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENVHTAELDIYVRSILK LEDLEPEEEFLRNYAVCDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLLVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLETIDPFKLIQEFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVLKSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVLNTLWNGKRRVFKVAFEDYVMLSDEDKVQGVFKPP IGVKPVKNIKICEELEKKADGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQLIFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVSKIPL HGLALKFFPDVNLSKEFFLQKSVLGSRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDKYIRAPTQFTRTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="RNA-dependent RNA polymerase" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aaatatggga ggatagatgg aactaaaatg tattatgagt attatagata 121 ttcaagtaaa atgagggaga ctaggaggaa gaaaggaacg aaatataaaa cggatgatga 181 gtttttagag cgcgagaggg atgcgggcag gttgaagctt tacgatttac aagtgatacg 241 agaggcatcc tgggaagatt tgctgtacga gaacgttcat actgcagagt tagatatcta 301 cgttagatca atcttgaagt tagaggattt agagccggaa gaggaatttt tgcgaaatta 361 tgcggtttgt gatggtgtgc atccgctgaa agatttcgtt gagatgaggg caaaaaacga 421 aatgcagatt tttggtgata tgcctattaa agcttggatc tcagtattaa tggaaatttc 481 gcgtgaaaca aagcataaac ctcttgggtt attggtggca tcggattttg ttggaagatt 541 cggttcgcct tttgagcaga atttcagaga tttgtcacag atcaacgaat atggttattg 601 ttactcaagt ccattattat ttgagatgtg cgtgactgaa tcaattttgg agtttaatat 661 gtggtaccga atgcgtgaag agagaataca atcactgaaa tttggattgg aaacaattga 721 ccctttcaaa ctgatacaag aattctttga aatatgtttg ccacatccta aaaagataaa 781 caacacgttg cgttcaccgt attcgtggtt cgttaaaaat tgggggatcg gatgtccgag 841 agtgaaagtt ctaacatcaa ttggaggtga ggatcgaaac tcaaaggagg ttttttatac 901 tggttatcat gagacagaaa atctatactc agagattgtc ttgaaatcaa agttttatag 961 agagagtcta aagcaaaata tgacaaaaac ggaagaagca attagctatt cgcaaaagct 1021 tggcaatcac gggagaacaa tgcctatttt cctgaaaatg ttaaaagcgg tatatacaac 1081 ggagtttgat ccaacaaaaa taagtcacgt tatactagcg tcattatgct taagcataca 1141 aacgataacg gggtacggga gggcgtgggt agttaacaaa tctagcgatt tggaagcgca 1201 gatgaaacca agtagtgata actatgttca gcgcgtatgt gactatacaa agaataactt 1261 tataaaagcc tatgaggaag cgagacgagg gggtgaagag atcgtgatgc ctgaagatat 1321 gtatacatcg atattacgtc ttgctaaaaa cacaagctca ggcttttcaa ctagtattga 1381 tgtttttaag cggtatggtc ccaacgcgaa aggtggacgt ggagaaaaga tccaaataac 1441 ttcgcggatt aaagcgttag tgattttcac aaaaggccac gaaatattta cgccaaaaaa 1501 tctagctttg aagtataaca ctaccgaatt tttccaaacg aaaggttcaa gagatgtccc 1561 gatcaaatct acgagaatag tgtactctat caatctttca attttagtac cgcagcttat 1621 agtaacgtta cccttgaatg agtatttcgc gagagcagga gggagtactt tgccagaaac 1681 acaacgtatg ggcgggaaaa ttatcgttgg agatttggag gctactggat cacgtgtgat 1741 ggacgctgca gacacattca ggaattcttc ggatccactc aatctaacca ttgcgatcga 1801 ttacagtgaa tttgatacac atttgacgcc ttataacttc agaaatggga tgctagatgg 1861 catacgggag gcaatgcgta gatatcaaca tttgagatat gagggataca cattagacga 1921 attaatagag tttggatatg gagagggtcg cgtgctgaac acattatgga atggaaaaag 1981 gcgagtattc aaagtggcat ttgaggatta tgttatgtta agtgatgaag ataaagttca 2041 gggagttttt aaaccaccta ttggagtgaa gccagtaaag aacattaaaa tttgtgaaga 2101 actggagaaa aaggcagacg gccgtgattt gattttggtt tcacctacgg atggaagcga 2161 tctagcgttg atcaataccc atttatccgg agaaaattcc acgttgatcg caaatagctt 2221 acataacctg gcgattggga ctgttattcg tgaagaagtg aagcgtattt ttggtgatga 2281 tatttcattt aagtcagagc agtacgtcgg tgatgacact ttattttata ctgaattgag 2341 gacgcgatca gtcgaacggt ttgattcaat tgtcgatacg atttttgaag ttattaagaa 2401 gagtggtcac gaagcctcaa tgtcaaaaac tctcatagct cccttttcag tcgaaaaaac 2461 acaaacgcac gctaagcagg gaatatatgt ccctcaggat cggatgatgc tagtttcgtc 2521 tgaacgaaga aaggatattg aggatgttgc agggtacctg agatcccaag ttcaaacatt 2581 gactacgaaa attagtcgtg gtttctcgca tgaattggcg cagctcattt ttatgatgaa 2641 gtcatcgatt atcgggcata ggaagctgaa gagaacgatt aaggatggag ggtacagaga 2701 taggaaatac gatgatgaca aggaggacgg cttcactttg ataatgttgc gagatccact 2761 tattgctttt tatcctgttg aatggaatgg ttttggggcg cacccggcgg cgatgaatat 2821 aataatgact gaagatatgt ttgtggattc agtgatgaga ggggagtgta gggcgtggat 2881 ggaaccttta gttaagttga ttgatcagtc tccgcccctg tggaatgaaa cgagcgcgga 2941 taaaaggatg attggtacgg acagtacgat gtcttttttc tctagaatgg cgaggccagc 3001 ggttcgaaca gtattaacga atactgaggt tggagatgcc gtgagaagtt tgcctctggg 3061 agacttctct cctttcaata tctctaagac tatgatgcac tcggcgctgt taaaggaaaa 3121 gaacgcccgt tcattactca ctccggcgta tgagatggaa tatcagaaag agttgcaagg 3181 ttggagacca agacagaaga agtttttagt gacatctaac gaaatggaaa tcaccacgaa 3241 ttacatgaaa atgtttaacg tcagtaaaat cccactgcac ggtttggcgt tgaagttttt 3301 cccagatgtt aacttgtcga aggaattttt cttacagaag agcgttttag ggagtagaga 3361 aagtccgaga gcgcgaatgt catatgttga tagaattgac tcaatactac gcggcgatgt 3421 tgtaatgcga gggttcatta ctgcgaatac catcattaac atattggaga aattgggaca 3481 cacgcactcg gcgagcgatt tgactacgtt attcgaaata atgaacttat catcaagcgt 3541 cgctcagcgg ctatcagagt atatcacgac cgaacgcgtt cgcttcgatg cgatgaaact 3601 atcaaagagg ggcatatgtg gtgacgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 gatggtggat aaatatatac gtgcgccgac acaatttact agaacggagc tcgacgccgt 3721 aaatttgtat gttgcccaac atattatgtt agatgcggcg acggggttaa cgccatcacg 3781 atatgatatt aatgtatcgg gagacgaaag ggtacgattt aagcagcgcg ttgcccgatt 3841 taatacacat ttacccaaga tgcggatggt caaaagattg atcgaaacgg agaggttgtc 3901 cgcgaggttg gttcagaacc agtttgtctg attagaacta gcaccccaca gctcaaaaca 3961 cttac //