LOCUS KP939478 3965 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 3 isolate AHSV-3_109_08 segment 1, complete sequence. ACCESSION KP939478 VERSION KP939478.1 KEYWORDS . SOURCE African horse sickness virus 3 ORGANISM African horse sickness virus 3 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /country="South Africa" /segment="1" /collection_date="25-Apr-2008" /db_xref="taxon:117204" /isolate="AHSV-3_109_08" /organism="African horse sickness virus 3" gene 14..3931 /gene="VP1" CDS 14..3931 /codon_start=1 /protein_id="ALM00143.1" /gene="VP1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENAHTAELDIYVRSILK LEDLEPEEEFLRNYAVYDGVHPLKEFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLEVIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVQKSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKTQGTFKPP IGVKPVKNIKICEELEKKVDGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQIIFMMKSSIIGHRKLKRTIKDGGYRDRRYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVGKIPL HGLTLKFFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDRYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="RNA-dependent RNA polymerase" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aagtatggga ggatagatgg aaccaagatg tattatgaat attacagata 121 ttcaagtaaa atgagggaga ctaggaggaa aaaagggacg aagtataaga cagatgatga 181 gtttttagaa cgcgagaggg atgcgggaag gttaaagctt tacgatctac aagtaatacg 241 ggaagcatcc tgggaagatt tgttgtacga aaatgctcat actgctgagt tagatattta 301 tgttagatca atcttgaaat tagaggactt agagccagaa gaagagtttt tgcgaaatta 361 cgcggtttat gatggcgtac acccactgaa ggagtttgtt gaaatgaggg cgaaaaatga 421 aatgcaaatt tttggtgata tgcctattaa ggcgtggatc tcagtattaa tggaaatttc 481 gcgcgaaact aagcataaac ctcttgggtt aatggtggct tcggactttg ttggaagatt 541 tggttcaccc tttgaacaga attttagaga tttgtcacag attaacgaat atggttattg 601 ttactcaagt ccattattat ttgagatgtg tgtaactgag tcaattttag aatttaatat 661 gtggtaccga atgcgtgaag aaagaataca gtcgctgaag tttggattgg aagtgattga 721 ccccttcaaa ttgatacgag aattttttga gatatgtttg ccgcatccaa aaaagataaa 781 caacacgttg cgctcgccgt attcgtggtt tgttaagaat tggggtattg gatgtccgag 841 agtgaaggtt ttaacatcga ttggaggtga ggatcggaat tcaaaggaag ttttttacac 901 cggttaccat gaaacagaga acctatactc agaaattgtc cagaaatcaa aattttacag 961 agaaagcttg aagcagaata tgacgaagac ggaggaggca attagctatt cgcaaaaact 1021 tggcaatcat gggagaacga tgcccatctt tctaaaaatg ttgaaggcag tatatacgac 1081 agagtttgat ccaacaaaaa taagtcacgt tatattggcg tcattatgcc taagtataca 1141 aacaataaca gggtatggaa gagcatgggt agttaataaa tctagtgatt tggaagcgca 1201 gatgaaacca agtagtgaca actatgtaca acgcgtatgc gattatacga aaaataattt 1261 tataaaagct tatgaagaag cgaggcgagg gggtgaagag atagtaatgc ccgaagatat 1321 gtatacatcg attttacgtc ttgctaaaaa tacaagttcg ggtttctcaa ctagtattga 1381 tgtttttaaa cggtatggtc ccaacgcgaa gggtggacgt ggggaaaaga ttcaaataac 1441 gtcgcggatt aaagcgttag tcattttcac aaaaggccat gaaatattta cgccaaagaa 1501 tctagctttg aagtataaca ctactgaatt ttttcaaacg aagggttcga gagacgttcc 1561 gattaagtcg acaagaatag tgtattctat caatctttca attctagttc cgcagcttat 1621 agtgacatta cccttgaatg agtatttcgc aagggcggga ggaagcactt tacctgaaac 1681 tcaacgtatg ggtgggaaga ttatcgttgg cgatctggag gctacaggat cacgtgtgat 1741 ggatgctgct gatacattta ggaattcttc agacccactt aacttaacca ttgcgattga 1801 ttacagcgag tttgatacgc atttaacacc ttataatttc aggaacggga tgctagacgg 1861 tatacgagag gcgatgcgca ggtatcaaca tctgagatat gaaggttata cattagacga 1921 attaatagag tttggatatg gagagggtcg cgtaatgaat acattatgga atggaaaaag 1981 gcgagtgttt aaagtggcgt ttgaggatta cgttatgtta agtgatgagg ataaaactca 2041 gggaaccttc aaaccgccca ttggggtgaa gccggtaaag aatattaaaa tttgtgaaga 2101 gctggagaaa aaggtggatg gccgtgattt gattttagtt tcgccaacag atggaagcga 2161 tctagcgcta attaacactc atttatccgg ggagaactct acgttgattg cgaacagtct 2221 acataatctg gcgattggaa cagttattcg tgaggaggta aagcgcattt ttggcgatga 2281 tatttcattt aaatcagaac agtatgttgg tgacgatacc ttattttaca ctgaattgag 2341 aacgcggtca gttgagcggt tcgattcaat cgtagatacg atttttgaag ttattaagaa 2401 gagtggccac gaagcttcga tgtctaaaac tcttatagct cccttttcgg ttgaaaaaac 2461 acaaacgcac gctaagcagg gaatatatgt cccacaggac cgaatgatgc tagtttcgtc 2521 tgaacgaaga aaagatatag aggatgttgc tgggtacctg agatctcaag ttcaaacgtt 2581 gacgacaaaa attagtcgtg gtttctcgca tgagctggcg caaatcattt ttatgatgaa 2641 gtcgtcgatt atcggacaca ggaaactaaa gaggacaatt aaagatggag gatatagaga 2701 taggaggtac gatgatgaca aggaggacgg ttttactctg ataatgttgc gagatccgct 2761 tattgctttt tatcccgttg aatggaatgg ctttggagcg cacccggcag cgatgaatat 2821 aataatgact gaagatatgt tcgtagactc agtgatgaga ggggaatgca gagcgtggat 2881 ggaaccttta gttaagctca ttgatcagtc tcctcccttg tggaatgaaa cgagtgcgga 2941 taaaagaatg attggtacgg atagtacgat gtcttttttc tcaagaatgg caaggccagc 3001 ggtacggacg gtattgacca acactgaagt aggagatgcc gtaagaagct tgcctttggg 3061 agatttctct cctttcaaca tctctaagac tatgatgcat tcggcgttat tgaaggaaaa 3121 gaatgcccgt tcactactta ccccagcgta tgagatggag tatcaaaaag agttgcaagg 3181 ctggagacca agacagaaga agttcttagt tacgtctaac gagatggaaa ttactacaaa 3241 ttatatgaag atgtttaacg ttggcaaaat tccactacat ggtttgacgt tgaagttttt 3301 cccagatgtt aacttgtcga aagaattttt cttacaaaag agtgttttag ggaatagaga 3361 gagtccgaga gcgcgaatgt catacgtcga tagaattgac tcaatactac gcggcgatgt 3421 cgtaatgcgg gggtttatca ctgcgaatac tattatcaat atattggaga aattagggca 3481 cacacattcg gcgagtgact taaccacgtt atttgagata atgaatttat catctagcgt 3541 cgctcagagg ctatcagagt atatcacgac cgaacgcgtt cgctttgacg ccatgaaact 3601 ctcaaagaga ggcatatgtg gtgatgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 aatggtagat agatatatac gtgcgccgac gcagtttacc aagacggagc ttgatgccgt 3721 aaatttatat gttgctcaac atattatgct agatgcagcg actgggttga cgccatcacg 3781 atatgatatt aatgtgtctg gagacgaaag ggtgcgattt aagcagcgcg ttgcccgatt 3841 taacacacac ttgcctaaga tgcggatggt caaaagattg attgaaacag aaaggttgtc 3901 cgcgagattg gttcagaacc agtttgtttg attagaacta gcacccctca gctcaaaaca 3961 cttac //