LOCUS       KP939514                1748 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 3 isolate AHSV-3_109_08 segment 5,
            complete sequence.
ACCESSION   KP939514
VERSION     KP939514.1
KEYWORDS    .
SOURCE      African horse sickness virus 3
  ORGANISM  African horse sickness virus 3
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="5"
                     /collection_date="25-Apr-2008"
                     /db_xref="taxon:117204"
                     /isolate="AHSV-3_109_08"
                     /organism="African horse sickness virus 3"
     gene            36..1682
                     /gene="NS1"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ALL99802.1"
                     /gene="NS1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNIATDNGSRINADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKLS
                     RWGQFGICYYDRTNVDGLIPYDEIGLAQAIDGLKDLIEGRLPVCPYTGANGRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWKLYPRLLRQRFAIEDATEGVIHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMVDLAMLDTIPVVDSKIAELTGGTDVFYTRAYVHADNHKVPNVRDLMMNEVF
                     RKIDDHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKPTARGRYIDWDDLGTFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein 1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga taggttcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggctgtttgg agagatttcc gaacaaatag
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatattgct acagataatg gctcacgcat aaatgcagat aaattagtgg
      241 ctttagcttt gcgggcgctt ttagatagac aaactatttg gacttgtgtc atcaaaaatg
      301 cggattatgt tagtcaatat gctgatgaac agatggagga agaagttaat aagctgtatg
      361 atgtctatct ccagagcggg acgagagaag aatttgaagg atttagacag aggaatagac
      421 caagtagagt tgtgatggat gatagctgct caatgctctc atatttttac attccaatga
      481 atcaagggaa tccagctcca gttgcgaagc ttagccgatg gggtcaattt ggaatttgtt
      541 actatgacag aacaaatgtt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctattgatgg cctaaaggat ctgattgagg gacgattgcc cgtttgccct tatactggag
      661 cgaatggcag aattaatgct gttttacatc taccattaga gatggaagtg attatggcgg
      721 tacaggaaaa tgcaacacaa ttaatgcgta gagcggcaca ggatttcaaa ttcatcacac
      781 acgctggatg gaagctatac ccaagattat tgcgacaacg gttcgcgatt gaggacgcaa
      841 cggaaggggt gattcatcat gtgatgctag gccatttaag atattatgat gaagatacga
      901 gtatcgtgaa gtatcgcttc cttaacgatg gatctttaga ttggaggact tggacaattc
      961 ctttacatct gatgcggaca gcaaggttgg gacatctgca accagaatca attttagtct
     1021 ttatgcacaa aaagcttaca tgtcaggtat gttttatggt tgacctcgct atgcttgaca
     1081 cgatcccagt ggttgactca aaaattgctg aactaacggg tggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacaatcaca aagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaaaatt gatgatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac cgtaactgca attcaaattc agaggtcgat tagaggtgat ggacagtggg
     1321 atactccgat gtttcaccaa tcaatggctt tgttgacacg attgattgtt tattggttaa
     1381 cggatgtgac tgagagaagc gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agccaacagc tcgaggtaga tacattgatt gggacgatct tggaacattc atgaagaatg
     1501 tattggatgg aagagatttg actgttttgg aagatgaaac atgttttatt tcgatgatga
     1561 ggatggcgat gctacatgtg cagagatcca aggtagtgtg cgcaactgtg ttggaggcgc
     1621 cattggagat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//