LOCUS       KP939550                1160 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 3 isolate AHSV-3_109_08 segment 9,
            complete sequence.
ACCESSION   KP939550
VERSION     KP939550.1
KEYWORDS    .
SOURCE      African horse sickness virus 3
  ORGANISM  African horse sickness virus 3
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1160)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="9"
                     /collection_date="25-Apr-2008"
                     /db_xref="taxon:117204"
                     /isolate="AHSV-3_109_08"
                     /organism="African horse sickness virus 3"
     gene            18..1118
                     /gene="VP6"
     CDS             18..1118
                     /codon_start=1
                     /protein_id="ALL99455.1"
                     /gene="VP6"
                     /translation="MSSALLLAPGDLIVKAKRELEQRSISSLLRSTSGELKEERKEKQ
                     NNQKDGEKEDKAKKGEEKIPKDGGLGSAKSAEPEPADGSGESAKSTGGDGGGGAGRGA
                     GGRGVGGVAGGAGGRGGSLRGGRDAGLGESTSGANHITNDDATRNAGSGEVPSGGVTS
                     GSSQGGGGGATTSGESGGQPLDRKSGASGDTRSPGEKTKVDGGDRRDGGLATQEIVDY
                     VRKKVGVEVPIYQKGMSNLFTVDRGLLERGGLSKDDLLHQSDIVKEAKANDKKLKVVP
                     LSTVKRIIAEFGGSEEEDVKGMQTQSSSIRYISNRMEDVPKAKAMFTAPTGDEGWKEV
                     AKAATLRPNIMAYVHEGEGDGLKELLHLIDHI"
                     /product="RNA helicase"
     gene            214..648
                     /gene="NS4"
     misc_feature    214..648
                     /gene="NS4"
                     /note="similar to non-structural protein 4"
ORIGIN      
        1 gttaaataag ttgtctcatg tcttcggcat tactcctcgc acctggcgat ctgatcgtta
       61 aagcaaagcg tgagctcgag cagcgctcga ttagctcatt gctgcgctct acgagtggag
      121 aactgaagga agagaggaaa gaaaagcaaa acaatcaaaa agacggggaa aaggaggaca
      181 aggcgaaaaa gggtgaggaa aagataccaa aagatggagg attgggatca gcaaaatcag
      241 cagaaccaga accagcggat ggatcaggag aatcagcaaa atcgacagga ggagatggag
      301 gtggaggagc agggcgcggg gctggaggga gaggagtggg cggagtggct ggaggggctg
      361 gaggacgtgg aggatcactt cgtgggggac gagatgcagg attgggcgaa tctacgtccg
      421 gagcaaatca tatcactaat gatgatgcaa cacgcaatgc tggttccggt gaggtaccat
      481 ctggtggagt cacttcagga agttctcagg gcggaggagg gggcgctaca acgagtggtg
      541 aatctggcgg gcaaccactg gataggaaga gcggcgcaag cggagataca agatctccag
      601 gcgagaagac aaaggttgat gggggcgatc gacgggatgg gggattagct actcaagaga
      661 tagtcgatta tgtcagaaag aaagttggag ttgaagttcc gatttatcag aagggaatga
      721 gcaacttatt tactgtagat aggggcttgc ttgagcgggg gggtttatct aaagatgatc
      781 tgctacatca atctgatatc gtaaaagagg cgaaggctaa tgataaaaaa ttgaaagtgg
      841 ttccactctc aacggtcaaa agaattattg cggaatttgg aggatcggaa gaagaagatg
      901 taaaggggat gcagacacaa agttcttcca taagatacat aagcaataga atggaagatg
      961 ttcctaaagc gaaggccatg ttcacggcgc cgactggaga tgaagggtgg aaggaggtcg
     1021 caaaagcggc gacgttgagg ccaaatatca tggcttacgt tcatgaaggg gaaggggatg
     1081 gactgaagga gcttttacat ttaatagatc atatctaggt ccaggggtaa acggcagctt
     1141 gcaggcaact taaaacttac
//