LOCUS       KP939521                1748 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 3 isolate AHSV-3_DG25327_14 segment
            5, complete sequence.
ACCESSION   KP939521
VERSION     KP939521.1
KEYWORDS    .
SOURCE      African horse sickness virus 3
  ORGANISM  African horse sickness virus 3
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="5"
                     /collection_date="11-Feb-2014"
                     /db_xref="taxon:117204"
                     /isolate="AHSV-3_DG25327_14"
                     /organism="African horse sickness virus 3"
     gene            36..1682
                     /gene="NS1"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ALL99809.1"
                     /gene="NS1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNIATDNGSRTNADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKLS
                     RWGQFGICYYDRTNVDGLIPYDEIGLAQAIDGLKDLIERRLPVCPYTGANGRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWKLYPRLLRQRFAIEDATEGVIHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMVDLALLDTIPVVDSKIAELTGGTDVFYTRAYVHADNHKVPNVRDLMMNEVF
                     RKIDDHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKPTARGRYIDWDDLGTFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein 1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga tagattcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggctgtttgg agagatttcc gaacaaatag
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatattgct acagataatg gctcacgcac aaacgcagat aaattagtgg
      241 ctttagcttt gcgagcactt ttagatagac aaactatttg gacttgtgtc atcaaaaatg
      301 cggattacgt tagtcaatat gctgatgaac agatggagga agaagttaat aagctgtatg
      361 atgtctatct ccagagcggg acgagagagg aatttgaagg atttagacag aggaatagac
      421 caagtagagt tgtgatggat gatagctgct caatgctctc atatttttac attccaatga
      481 atcaagggaa tccagctcca gttgcgaagc ttagccgatg gggtcaattt ggaatttgtt
      541 actatgacag aacaaatgtt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctatagatgg tttaaaggat ttgattgaaa ggcgattgcc cgtttgccct tatactggag
      661 cgaatggcag gattaatgct gttttacatc taccattaga gatggaagtg attatggcgg
      721 tacaggaaaa tgcaacgcaa ttaatgcgta gagcggcaca ggatttcaaa ttcatcacac
      781 acgctggatg gaagctatac ccaagattgt tgcgacaacg gttcgcgatc gaggacgcta
      841 cggaaggggt gattcatcat gtgatgctag gccatttaag atattatgat gaagatacaa
      901 gtatcgtgaa gtatcgcttc cttaacgatg gatctttaga ttggaggact tggacaattc
      961 ctttacatct gatgcggaca gcaaggttgg gacatctgca accagaatca attttagtct
     1021 tcatgcataa aaagctcacg tgtcaggtat gttttatggt tgacctcgct ctgcttgaca
     1081 caatcccagt ggttgattca aaaattgctg aactaacagg aggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacaatcaca aagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaagatc gatgatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac cgtaactgca attcagatcc agaggtcgat cagaggtgat gggcagtggg
     1321 atactccgat gtttcaccaa tcaatggctc tgttaacacg attgattgtt tattggttaa
     1381 cggatgtgac tgagagaagc gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agccaacagc tcgaggtaga tatattgact gggatgatct tggaacattc atgaagaatg
     1501 tgttggatgg aagagatttg actgttttgg aagatgaaac atgttttatt tcgatgatga
     1561 ggatggcgat gttgcatgtg cagagatcca aggtagtgtg cgcaactgtg ttggaggcgc
     1621 cattggaaat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//