LOCUS AHVCPVP3 2789 bp RNA linear VRL 31-JAN-2003 DEFINITION African horse sickness virus 4 VP3 gene for core protein, complete cds. ACCESSION D26572 VERSION D26572.1 KEYWORDS . SOURCE African horse sickness virus 4 ORGANISM African horse sickness virus 4 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 2789) AUTHORS Sakamoto,K., Punyahotra,R., Mizukoshi,N., Ueda,S., Imagawa,H., Sugiura,T., Kamada,M. and Fukusho,A. TITLE Rapid detection of African horsesickness virus by the reverse transcriptase polymerase chain reaction (RT-PCR) using the amplimer for segment 3 (VP3 gene) JOURNAL Arch. Virol. 136 (1-2), 87-97 (1994) PUBMED 8002793 REFERENCE 2 (bases 1 to 2789) AUTHORS Fukusho,A. TITLE Direct Submission JOURNAL Submitted (21-JAN-1994) Akio Fukusho, National Institute of Animal Health; 6-20-1 Josui-Honcho, Kodaira, Tokyo 187, Japan (Tel:81-423-21-1441, Fax:81-423-25-5122) FEATURES Location/Qualifiers source 1..2789 /mol_type="genomic RNA" /db_xref="taxon:36421" /clone="pAH4.3-KS" /serotype="4" /segment="3" /organism="African horse sickness virus 4" gene 27..2741 /gene="VP3" CDS 27..2741 /codon_start=1 /protein_id="BAA05621.1" /gene="VP3" /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQ KIRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTE YVLQVNTFYERMSEIGGPIDETDPIGFYALILEKLKFLKSEGAFILQGIATKDYRGAE IADPEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYR IHNVLQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPI NANVIWNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLT PTAVQMNDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTN ITPTMAELLDRALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRATHKRV GLQRVGVVDVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRMLV AAGKDQEAAYLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNFIQGNFGE TDPVVLEVSWASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMMR ARVPDTVINATPSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDIQESL AYVLNREAWAIANDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFYTNMIDGAPP IGDVTHYTYAIANLQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEIL TAMPYVYTEEERDGVRMVAFKYATTATAYFLLYNVAYSNTPDTLITVNPTFTMTKIHM RKKIVRRVRAPDVVSQVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" /product="core protein" ORIGIN 1 gtttattttc tgctgtgaac tccagaatgc aagggaatga aagaatacaa gataaaaatg 61 agaaggagaa ggcgtatgca ccatatcttg acggagcgag cgtatcaacg gataatgggc 121 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa aattaggcaa aatcagagcg 181 atatggctgc acatgctccc gatgttgatg gggcgatacc agaggtaatg actataatca 241 gtggaattaa gggattgctg gaagaaaagg attacaaagt gataaacgcg cctccgaatt 301 cttttcgcac gatcccgatg caaagtacgg agtatgtttt gcaagtgaac acgttttatg 361 agaggatgtc agaaattgga gggccgatcg atgagacgga tcctattgga ttttatgcat 421 tgatactgga gaaattgaaa tttctgaaat ccgagggggc tttcatctta caggggatag 481 ctactaaaga ttataggggc gcagagattg ctgatccaga gataatcggg gttagtttcc 541 aaaatgcgtt gagtcatttg gcagcaatag atcgtcaaat catacaggat actctcaatg 601 ggatgatcat tgaaaacgga ctagtggcag atagaaatgt ggacgtgttt agagcagcga 661 tgtcggaccc aatctatcgg atacacaatg tattacaagg atatattgaa ggtatacaat 721 atggggagtt gcgtgaatca gtcaattggt tgatgaggct tggactaagg aagagaatcg 781 agttcgccaa cgatttcttg actgatttca gacgcgcaga cactatttgg ataatatcac 841 aaaggttacc gattaatgct aatgtaattt ggaatgttcc aagatgccat atagcaaatc 901 taatcacaaa tgtcgcgtta tgcttaccaa ccggagagta tttgatgccc aacccaagaa 961 ttaattcgat cacaatcaca cagcgtatca ctcagactaa ccctttttca ataatttcag 1021 ggttaacccc gacagcggtt cagatgaatg atgttagaaa aatatatctt gcgttgatgt 1081 ttcccaacca aattattctg gatataaaac cagacagctc gcatgcggta gatccagttt 1141 tgcgaatggt cgcgggagta ttgggccatg taatgtttac ttacggaccg atcatgacaa 1201 acataactcc aacgatggct gaattgcttg atcgtgcgct gagcgattat ttattgtaca 1261 tgtataacaa tcggattccg ataaattacg gtccaacagg tcaaccccta gattttcgca 1321 ttggagcaag aaatcagtat gattgtaatg ctttccgagc gacccacaaa cgggtcgggt 1381 tacaacgggt gggggtagtt gatgttcaga gagtccagcc gagtccatat gatcatgttc 1441 agcgtgtaat ccgttactgt gacattgatt caagggagat catagatcca agaacttatg 1501 ggatgaatat gacatatcca atatttcggg aaatgcttag aatgctagta gctgcgggaa 1561 aagatcaaga agcagcttat ttgagacaga tgctgccttt tcatatgatt cgttttgcgc 1621 gaataaatca aattataaat gaagatttgc tcagtgcttt ctctttgccg gatcaaaatt 1681 tcgatgtggt cctacacaac ttcatacaag gtaatttcgg agaaacagac ccggtagttt 1741 tggaggtgag ttgggcttcg atctggttcg ccttcgtgag gcgttttgag cccatcgccc 1801 gttcagattt acttgaggcg gctcctctga ttgaagctag atatgcagct gaattatcca 1861 cgatgcagat ggatgtacag cagctgagga tgatgcgagc tagagttccg gacactgtga 1921 ttaatgcgac gccaagtcaa tgctggaaag cagttttgaa gaatgcgcca gagccaatta 1981 aaaatttaat gaacttgtct cattctttca gttttgtgaa tgtacgagat attgtaaggt 2041 ggagtcaaca gagggacatt caggagtcgt tagcatatgt cttgaatagg gaagcttggg 2101 cgatcgctaa tgactttgaa gatttgatgc tagtggatca cgtgtatata cagcgtacga 2161 tgttacctga acctagatta gacgatatca acgagttcag gcggcaagga ttcttctata 2221 cgaatatgat cgatggagcg ccaccaattg gagatgttac tcactacacc tatgcgattg 2281 caaatctaca ggcgaatatg ggacagttca gagcagcgat caggcgtaca ctggatgata 2341 acggttggat tcagttcggt ggtatgttac ggaatatcaa gattaaattt tttgattcgc 2401 ggccgcccga tgagatactg acggcaatgc cttatgtgta cacagaggag gagagggatg 2461 gagtgaggat ggtcgctttt aaatacgcaa caaccgcgac tgcctacttc ttattgtata 2521 acgttgcgta ttcaaatacg ccagatactt tgatcacagt gaacccaaca tttacgatga 2581 cgaagattca tatgcggaag aaaattgtca gacgagttcg cgctccagat gtcgtatcgc 2641 aggttaacaa acgtttagtc gcgtacaaag gtaagatgcg tttaatggat gtaacgaaat 2701 gcctaaagac tggagttcaa ctcgcgcgac caacgattta gcagcctgac cacctggtga 2761 atcgttctag cgggcagaat tacacttac //