LOCUS KP939594 2792 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 4 isolate AHSV-4_1927_14 segment 3, complete sequence. ACCESSION KP939594 VERSION KP939594.1 KEYWORDS . SOURCE African horse sickness virus 4 ORGANISM African horse sickness virus 4 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2792 /mol_type="genomic RNA" /country="Namibia" /segment="3" /collection_date="04-Apr-2014" /db_xref="taxon:36421" /isolate="AHSV-4_1927_14" /organism="African horse sickness virus 4" gene 27..2744 /gene="VP3" CDS 27..2744 /codon_start=1 /protein_id="ALL99985.1" /gene="VP3" /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQ KIRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTE YVLQVNTFYERMSEIGGPVDETDPIGFYALILEKLKFLKSEGAFILQGIATKDYRGAE IADPEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYR IHNVLQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPI NANVIWNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLT PTAVQMNDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTN ITPTMAELLDAALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRADPQTG RGYNGWGVVDVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRML VAAGKDQEAAYLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNLIQGNFG ETDPVVLEVSWASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMM RARVPDTVINATPSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDIQES LAYVLNREAWAIANDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFHTNMIDGAP PIGDVTHYTYAIANLQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEI LTAMPYVYTEEERDGVRMVAFKYATTATAYFLLYNVEYSNTPDTLITVNPTFTMTKIH MRKKIVRRVRAPDVLSQVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" /product="inner core protein" ORIGIN 1 gtttattttc tgctgtgaac tccagaatgc aagggaatga aagaatacaa gataaaaatg 61 agaaagagaa ggcgtatgca ccatatcttg acggggcgag cgtatcaacg gataatgggc 121 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa aattaggcaa aatcagagcg 181 atatggctgc acatgctccc gatgttgatg gggcaatacc agaggtaatg acgataatca 241 gtggaattaa gggattgctg gaagaaaaag attacaaagt gataaatgcg ccaccgaatt 301 cttttcgcac gatcccgatg caaagtacgg agtatgtttt gcaagtaaac acgttttatg 361 agaggatgtc agaaattgga ggaccggtcg atgaaacgga tcctattgga ttttatgcat 421 tgatactaga gaaactgaaa tttttgaaat ccgagggggc tttcatctta caggggatag 481 ccactaaaga ttataggggc gcagagatcg cggatccaga gataatcggg gttagttttc 541 aaaatgcgtt gagtcatttg gcagcaatag atcgccaaat tatacaggat actcttaatg 601 gaatgatcat tgaaaatgga ctagtggcag atagaaatgt ggacgtgttt agagcggcga 661 tgtcggaccc aatctatcgg atacacaatg tattacaagg atatattgaa ggtatacaat 721 atggggagtt gcgtgaatca gtcaattggt tgatgaggct tggactaagg aagagaattg 781 agtttgccaa cgatttcttg actgatttca gacgcgctga cactatttgg ataatatcac 841 aaaggttacc gattaatgct aatgtaattt ggaatgttcc aagatgtcat atagcaaatc 901 taatcacaaa tgtcgcgtta tgcttaccaa ccggagagta tttgatgccc aacccaagaa 961 ttaattcgat cacaatcaca caacgtatca ctcagactaa tccattttca ataatttcag 1021 gtttaacccc aacagcggtt cagatgaatg atgttagaaa aatatatctt gcgttgatgt 1081 ttcccaacca aattattctg gatataaagc cagacagctc gcatgcggtg gatccagttt 1141 tacgaatggt cgcgggagta ttgggccatg tgatgtttac ctacggaccg atcatgacaa 1201 acataactcc aacgatggct gaattgcttg atgctgcgct gagcgattat ctattgtaca 1261 tgtataacaa tcggattccg ataaattatg gtccaactgg tcaacctcta gactttcgca 1321 ttggagcaag aaatcagtat gattgtaacg ctttccgagc ggacccgcaa acgggtcgag 1381 gttataacgg gtggggggta gttgatgttc agagagtcca gccgagtcca tatgatcacg 1441 ttcagcgtgt aattcgttac tgtgacattg attcaaggga aatcatagat ccaagaactt 1501 atgggatgaa tatgacctat ccaatatttc gggaaatgct tagaatgtta gttgccgcgg 1561 gaaaagatca agaagcagct tatctaagac agatgctgcc ttttcatatg attcgttttg 1621 cgcgaataaa tcaaattata aatgaagatt tgctcagtgc tttctctttg ccggatcaaa 1681 atttcgatgt ggttctacat aacttaatac aaggtaattt tggagagaca gacccggtag 1741 ttttggaggt gagttgggct tcgatctggt tcgcttttgt gaggcgtttc gaacccatcg 1801 cccgttcaga tttacttgag gcggctcctc tgattgaggc tagatatgca gctgaattat 1861 cgacgatgca gatggatgta cagcagctga ggatgatgcg agctagagtt ccggacactg 1921 tgattaatgc gacgccaagt caatgctgga aagcagtttt gaagaatgcg ccagagccaa 1981 ttaaaaattt aatgaactta tctcattctt ttagttttgt aaatgtacga gatattgtaa 2041 ggtggagtca acagagggat attcaggagt cattagcata tgtcttgaat agggaagctt 2101 gggcgattgc taacgacttt gaagatttga tgttagtgga tcacgtgtat atacagcgta 2161 cgatgttacc tgaaccgagg ctagatgata tcaacgagtt taggcggcaa gggttcttcc 2221 atacgaatat gattgatgga gcgccaccaa tcggagacgt tacccactac acttatgcga 2281 ttgcaaatct acaggcgaat atggggcagt tcagagcagc gatcaggcgt acgctggatg 2341 ataacggttg gattcagttc ggtggtatgt tacggaacat caagattaaa ttttttgatt 2401 cacggccgcc cgatgagata ttgacggcaa tgccttatgt gtacacagag gaggagaggg 2461 atggagtgag aatggtcgct tttaaatacg caacaactgc aactgcctac ttcttattgt 2521 ataacgttga gtattcaaat acgccagata ctttgatcac agtaaaccca acatttacga 2581 tgacgaagat tcatatgcgg aagaaaattg tcagacgagt tcgcgctcca gatgtactat 2641 cacaggttaa caaacgttta gtcgcgtaca aaggtaagat gcgtctaatg gatgtaacga 2701 aatgcctaaa gactggagtt caactcgcgc gaccaacgat ttagcagcct gaccacctgg 2761 tgaatcgttc tagcgggcag aatcacactt ac //