LOCUS       KP939620                1748 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 4 isolate AHSV-4_1927_14 segment 5,
            complete sequence.
ACCESSION   KP939620
VERSION     KP939620.1
KEYWORDS    .
SOURCE      African horse sickness virus 4
  ORGANISM  African horse sickness virus 4
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="Namibia"
                     /segment="5"
                     /collection_date="04-Apr-2014"
                     /db_xref="taxon:36421"
                     /isolate="AHSV-4_1927_14"
                     /organism="African horse sickness virus 4"
     gene            36..1682
                     /gene="NS1"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ALL99811.1"
                     /gene="NS1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNIATDNGSRTNADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKLS
                     RWGQFGICYYDRTNVDGLIPYDEIGLAQAIDGLKDLIEGRLPVCPYTGANSRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWKLYPRLLRQRFAIEDATEGVIHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMADLAMLDTIPVVDSKIAELTGGTDVFYTRAYVHADNHKVPNVRDLMMNEVF
                     RKIDNHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKPTARGRYIDWDDLGIFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein 1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga taggttcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggctgtttgg agagatttcc gaacaaatag
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatattgct acagataatg gctcacgcac aaatgcagat aaattagtgg
      241 ctttagcttt gcgagcactt ttagatagac aaactatttg gacttgtgtc atcaaaaatg
      301 cggattacgt tagtcaatat gctgatgaac agatggaaga agaagttaat aagctatatg
      361 atgtctatct ccagagcggg acgagagagg aatttgaagg atttagacag aggaatagac
      421 caagtagagt tgtgatggat gatagctgct caatgctctc atatttttac attccaatga
      481 atcaagggaa tccagctcca gttgcgaagc ttagtcgatg gggtcaattt ggaatttgtt
      541 actatgacag aacaaatgtt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctattgatgg cttaaaggat ctgattgaag gacgattgcc cgtttgccct tatactggag
      661 cgaatagcag aattaatgct gttttacatc taccattaga gatggaagtg attatggcgg
      721 tacaggaaaa tgcaacacaa ttaatgcgta gagcggcaca ggatttcaaa tttatcacac
      781 acgctggatg gaagctatat ccaagattat tgcgacaacg gttcgcgatc gaggatgcaa
      841 cggaaggggt gattcatcat gtgatgctag gccatttaag atattatgat gaagacacaa
      901 gtatcgtgaa gtatcgcttc ctcaacgatg gatctttaga ttggaggact tggacaattc
      961 ctttacatct gatgcggaca gcgaggttgg gacatctgca accagaatcg attttagtct
     1021 tcatgcataa aaagcttaca tgtcaggtat gttttatggc tgaccttgct atgcttgaca
     1081 cgattccagt ggttgattca aaaatcgctg aactaacagg aggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacaatcaca aagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaagatt gataatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac cgtaactgca attcaaatcc agaggtcgat cagaggtgat ggacagtggg
     1321 atactccgat gtttcaccaa tcaatggctc tgttaacacg attgatcgtt tactggttaa
     1381 cggatgtgac tgagagaagc gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agccaacagc tcgaggtaga tatattgatt gggacgatct tggaatattc atgaagaatg
     1501 tattggatgg aagagatttg actgttttgg aagatgaaac atgttttatc tcgatgatga
     1561 ggatggcgat gttgcatgtg cagagatcca aggtggtgtg cgcaactgtg ttggaggcgc
     1621 cattggagat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//