LOCUS       KP939837                1978 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 6 isolate AHSV-6_110_00 segment 4,
            complete sequence.
ACCESSION   KP939837
VERSION     KP939837.1
KEYWORDS    .
SOURCE      African horse sickness virus 6
  ORGANISM  African horse sickness virus 6
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1978)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="4"
                     /collection_date="17-May-2000"
                     /db_xref="taxon:86060"
                     /isolate="AHSV-6_110_00"
                     /organism="African horse sickness virus 6"
     gene            12..1940
                     /gene="VP4"
     CDS             12..1940
                     /codon_start=1
                     /protein_id="ALL99921.1"
                     /gene="VP4"
                     /translation="MEPYAILYVTQEIEYLLKDSFLPKWELDGIKDLNTLWLERGRMA
                     CDTYAVGKIDQWSVRQLRAHRFLFISTKRKIRLKDCTISPDIFILKKELKEYDMKRFE
                     TLIGRRRVTLRKSFGNMLRAYAFQHVTVLHGSEAETLSYADPKRHVVKGQPKAAPMYD
                     HPDKWWRDVDDGPTDKKLVSMLDYIIYSADEVYYVGCGDLKTLEQFASRDRKRFDRIK
                     WICIDPIAPGTPYANVKTVKEKVVSARDLKHYLMRDDVERLLIWDVSADGLKGTIEWE
                     KQRFKEDRNGENIAEALCTDFALALIKHRIPEESDEYICRSSWLLPQPGAPITMYELR
                     NLMRLDGFSHVERKHIPRAYVRKIDAEVARRLVEEYHGEDVGRLLKRSLYEDIHIERA
                     DGLTDGDERTRADLFYLTNMRNAAFMHDVYRVVEKSFISTLWVSSRQNFTYDDVPVNR
                     NFITLRFSKKNRRVLDGNGAILFLMWQHPRDFPKTTNYDPSWAENYAVIFYHGLTNPV
                     PDLSLCRFIGLRLMSSTLRINSDRAHQVTDILKKLGLDVSGHLFICLMSNSYVADLDW
                     WFRMILEWSVKDREGKLAALSEAKAELIEWKDEKADEPWHIKNEMLAALFEFMYFAKH
                     FEINERYVESWIQYLRNA"
                     /product="RNA capping and methylase protein"
ORIGIN      
        1 gtttatttag gatggaacct tacgcaatat tgtatgttac gcaggagatc gaatacctac
       61 tcaaagatag ttttcttcca aagtgggaac ttgatggaat taaggatctt aatacattat
      121 ggttggagag gggcagaatg gcgtgtgaca catacgcagt tggaaaaatt gatcaatggt
      181 cggtgcggca gctacgcgcg catagatttt tgttcataag tacgaagaga aaaatcaggt
      241 tgaaggattg cacgatttcg cccgacatat tcatcttgaa aaaagaatta aaggagtatg
      301 atatgaagag atttgaaacg ttaattggca gaagaagggt aacgttaagg aagagtttcg
      361 ggaatatgtt aagggcctat gctttccaac acgtgaccgt tctacacggg agtgaggcgg
      421 aaacgttgag ttatgcggat ccgaagagac acgtcgtgaa aggtcagcct aaagctgctc
      481 caatgtatga tcatccagac aaatggtggc gggatgttga tgatggacca accgataaga
      541 aattagttag tatgcttgat tacattatat atagtgcgga tgaagtgtat tatgtcggat
      601 gtggtgattt aaaaacactt gagcaattcg cgtctagaga taggaagcgg tttgacagaa
      661 tcaagtggat atgcatagat ccaatcgctc cgggaacacc gtacgcaaat gtaaagactg
      721 taaaagaaaa agttgtgtca gcgcgtgatt tgaaacatta tttgatgcgc gatgacgtcg
      781 agcgattatt aatttgggat gtaagtgcag atgggctgaa ggggacaatt gagtgggaga
      841 aacagagatt taaggaggat cgtaatggtg agaacatcgc ggaagcgctg tgcacagatt
      901 tcgctttagc tttgattaaa catcgaatac cagaagagag tgatgaatat atttgcagga
      961 gctcttggct actgccacag cccggggctc caataacgat gtatgagcta cgaaatctca
     1021 tgcgtttgga cggattttca catgtcgaaa ggaaacatat accaagagcg tacgtccgga
     1081 aaatcgatgc ggaagttgcg agaagattag ttgaagagta tcatggagaa gatgtagggc
     1141 gattgttgaa acgatcttta tatgaggata tacatattga gcgcgctgat gggctaacgg
     1201 atggtgacga gagaacgaga gcggatctct tttacttgac aaatatgcgg aacgctgcgt
     1261 tcatgcatga tgtatatcga gtagttgaaa aaagttttat ttctacgctg tgggtttcga
     1321 gcaggcagaa tttcacatat gatgatgtcc cggttaatag gaattttatt acattacgct
     1381 tttcgaagaa aaatcgacga gtgctcgacg ggaatggagc gatcttgttt ttgatgtggc
     1441 agcatccaag agattttcca aaaactacga actatgaccc cagttgggcg gaaaactatg
     1501 ctgtcatttt ctatcatgga ttaacgaatc cggttccgga tctttcatta tgcaggttta
     1561 ttggattaag gttgatgtct tcaactttga ggataaattc agatcgtgca catcaagtga
     1621 ctgatatttt gaaaaaattg ggcttggacg tatcgggtca tctatttatt tgtttaatgt
     1681 caaattcata tgttgctgat cttgattggt ggtttcgcat gatcctagag tggtcagtta
     1741 aggatagaga agggaagctg gcggcgttaa gtgaggcgaa ggcagaactc attgagtgga
     1801 aggatgagaa agcggacgag ccttggcaca taaaaaatga aatgctggca gcgttatttg
     1861 agtttatgta ctttgcgaaa cattttgaga taaacgagag gtatgtcgag tcctggatac
     1921 aatatctgcg taacgcttaa aggtgacact tagcgagggg gaatcctaat aaccttac
//