LOCUS       KP939850                1748 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 6 isolate AHSV-6_110_00 segment 5,
            complete sequence.
ACCESSION   KP939850
VERSION     KP939850.1
KEYWORDS    .
SOURCE      African horse sickness virus 6
  ORGANISM  African horse sickness virus 6
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="5"
                     /collection_date="17-May-2000"
                     /db_xref="taxon:86060"
                     /isolate="AHSV-6_110_00"
                     /organism="African horse sickness virus 6"
     gene            36..1682
                     /gene="NS1"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ALL99834.1"
                     /gene="NS1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNIATDNGSRTNADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKFS
                     RWGQFGICYYDRTNIDGLIPYDEIGLAQAMDGLKDLIEGRLPVCPYTGANGRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWRLYPRLLRQRFAIEDATEGVVHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMVDLALLDTIPVVDSKIAELTGGTDVFYTRAYVHADDHRVPNVRDLMMNEVF
                     RKIDDHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKPTARGRYIDWDDLGTFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein 1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga taggttcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggctgtttgg agagatttcc gaacaaattg
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatattgct acagacaatg gctcacgcac aaacgcagat aaattagtgg
      241 ctttagcttt gcgagcactt ttagatagac aaactatttg gacttgtgtc atcaaaaacg
      301 cagattacgt tagtcaatat gctgatgaac agatggagga agaagttaac aagctgtatg
      361 atgtctatct ccaaagcggg acgagagagg aatttgaagg atttagacag aggaatagac
      421 caagtagagt tgtgatggat gatagctgct caatgctctc atatttttac atcccaatga
      481 atcaagggaa tccagctcca gttgcaaagt ttagccgatg gggtcaattt ggaatttgtt
      541 actatgacag gacaaatatt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctatggatgg tttaaaggat ctgattgaag gacgattgcc cgtttgtcct tatactggag
      661 cgaatggcag gattaatgct gttttacatc taccattaga gatggaagtg attatggcgg
      721 tacaggaaaa tgcaacgcaa ttgatgcgta gagcggcaca ggatttcaaa ttcatcacac
      781 atgctggatg gaggctatac ccaagattgt tgcgacaacg gttcgcgatc gaggacgcca
      841 cggaaggggt ggttcatcat gtgatgctag gccatttaag atattatgat gaagatacaa
      901 gtatcgtgaa gtatcgcttc cttaacgatg gatctttaga ttggagaact tggacaatcc
      961 ctttacattt gatgcggaca gcaaggttgg gacatctgca accagaatca attttggtct
     1021 tcatgcataa aaagctcacg tgtcaggtat gtttcatggt tgacctcgct ctgcttgata
     1081 caatcccagt ggttgattca aagattgctg aactaacagg aggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacgatcaca gagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaagatt gacgatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac cgtaactgca attcagatcc agaggtcgat cagaggtgat gggcagtggg
     1321 atactccgat gtttcaccaa tcaatggctc tgttaacgcg attaattgtt tattggttaa
     1381 cggatgtgac tgagagaagc gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agccaacagc tcgaggtaga tatattgatt gggatgatct tggaacattc atgaagaatg
     1501 tgttggatgg aagagatttg actgttttgg aagatgaaac gtgttttatt tcgatgatga
     1561 ggatggcgat gttgcatgtg cagagatcca aggtagtgtg cgcaactgtg ttggaggcgc
     1621 cattggaaat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//