LOCUS       KP939863                1566 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 6 isolate AHSV-6_110_00 segment 6,
            complete sequence.
ACCESSION   KP939863
VERSION     KP939863.1
KEYWORDS    .
SOURCE      African horse sickness virus 6
  ORGANISM  African horse sickness virus 6
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="6"
                     /collection_date="17-May-2000"
                     /db_xref="taxon:86060"
                     /isolate="AHSV-6_110_00"
                     /organism="African horse sickness virus 6"
     gene            20..1537
                     /gene="VP5"
     CDS             20..1537
                     /codon_start=1
                     /protein_id="ALL99747.1"
                     /gene="VP5"
                     /translation="MGKFTSFLKRAGSATKKALTSDAAKRMYKMAGKTLQKVVESEVG
                     SAAIDGVMQGTIQSIIQGENLGDSIKQAVILNVAGTLESAPDPLSPGEQLLYNKVSEI
                     ERAEKEDRVIETHNKKIVEKYGEDLLKIRKIMKGEAEAEQLEGKEMEYVEKALRGMLK
                     IGKDQSERITRLYRALQTEEDLRTSDETRIISEYREKFDALKQAIELEQQATHEEAVQ
                     EMLDLSAEVIETAAEEVPVFGAGAANVVATTRAIQGGLKLKEIIDKLTGIDLSHLKVA
                     DIHPHIIEKAMLKDKIPDNELAMAIKSKVEVVDEMNTETEHVIESIMPLVKKEYEKHD
                     NKYHVNIPSALKIHSEHTPKVHIYTTPWDSDKVFICRCIAPHHQQRSFMIGFDLEIEF
                     VFYEDTSVEGHIMHGGAVSIEGRGFRQAYSEFMNAAWSMPSTPELHKRRLQRSLGSHP
                     IYMGSMDYTISYEQLVSNAMKLVYDTDLQMHCLRGPLKFQRRTLMNALLFGVKVA"
                     /product="outer capsid protein"
ORIGIN      
        1 gtttattttt ccagagacca tgggtaagtt cacatccttc ttgaagcgtg cgggtagcgc
       61 aaccaagaaa gcactaactt cagatgcggc taaaaggatg tataagatgg ctggtaaaac
      121 gttacagaaa gtcgtagaaa gtgaggtagg aagcgcggcg atagatggag taatgcaagg
      181 aacaattcag agcataatac agggtgaaaa tttaggcgac tcaatcaaac aagcagtaat
      241 tttgaacgta gctggcacgt tagagtcggc tccagaccca ttaagcccag gtgaacaact
      301 attatataat aaagtatctg aaatcgaaag agcggagaag gaagatcgtg tgattgagac
      361 acataataaa aagattgtcg aaaagtatgg ggaagattta ttgaagatcc ggaaaataat
      421 gaagggagag gctgaagcag agcagctcga aggaaaagaa atggaatacg tcgaaaaagc
      481 gctaaggggc atgctgaaaa tcgggaaaga tcaatctgag cgtattacac ggttgtaccg
      541 cgctctccaa acggaggagg atttaagaac ttcggatgag acgaggatca tcagcgagta
      601 tagagaaaaa tttgatgcat tgaaacaggc gattgaactt gaacagcagg caacgcatga
      661 agaagctgtg caggaaatgt tggatttaag tgccgaggtc atcgaaacgg cggctgagga
      721 ggtgccagtc tttggcgcag gcgcagcaaa tgttgttgcg acgacacgcg caattcaagg
      781 aggcctaaag ctgaaggaga taatagataa actcacaggg atcgatctct cccatttgaa
      841 agtagcagat attcatcctc acataattga gaaagcaatg ttaaaggata aaattcccga
      901 caacgagtta gcgatggcga taaagtcgaa ggttgaggtt gtcgatgaga tgaatacgga
      961 gacggaacac gttatagagt ccatcatgcc tctagtgaag aaagaatacg aaaagcatga
     1021 taacaaatac catgtaaata taccaagtgc gttgaaaata cattcagagc atacgccaaa
     1081 ggtacacata tacactacac cgtgggactc tgataaagtt ttcatatgca gatgcattgc
     1141 gccacatcac cagcagagga gttttatgat tggatttgat ttagagattg aatttgtctt
     1201 ctatgaagat acctcggttg agggtcacat tatgcatggg ggagcggtgt cgattgaggg
     1261 acgaggattt agacaggctt atagtgagtt catgaacgcg gcttggtcta tgccctcgac
     1321 tccagagcta cataagagaa ggttacaacg tagtctgggc tcacatccga tttatatggg
     1381 atcgatggat tataccataa gttatgaaca gctcgtttcg aacgcgatga agttagtcta
     1441 tgacacggac ctacagatgc actgtttacg tggaccactg aaattccaaa ggcgcaccct
     1501 gatgaacgcg cttctctttg gtgtgaaagt agcttgaaag cctcatggcg cgggaaaaac
     1561 acatac
//