LOCUS KF963088 3202 bp RNA linear VRL 31-DEC-2015 DEFINITION African horse sickness virus 6 isolate ETH2010/19 Outer capsid protein (VP2) gene, complete cds. ACCESSION KF963088 VERSION KF963088.1 KEYWORDS . SOURCE African horse sickness virus 6 ORGANISM African horse sickness virus 6 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3202) AUTHORS Bachanek-Bankowska,K., Maan,S., Gelaye,E., Ayelet,G., Jenberie,S., Sutton,G., Aklilu,N., Oura,C., Batten,C. and Mertens,P.P.C. TITLE Sequencing and molecular typing of African horse sickness virus isolates from outbreaks in Ethiopia during 2010 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3202) AUTHORS Bachanek-Bankowska,K. TITLE Direct Submission JOURNAL Submitted (13-DEC-2013) The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, United Kingdom COMMENT ##Assembly-Data-START## Assembly Method :: Lasergene v. 10 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3202 /mol_type="genomic RNA" /country="Ethiopia" /segment="2" /collection_date="21-Jun-2010" /host="horse" /db_xref="taxon:86060" /isolate="ETH2010/19" /serotype="6" /organism="African horse sickness virus 6" gene 1..3202 /gene="VP2" CDS 13..3168 /codon_start=1 /protein_id="AIX10308.1" /gene="VP2" /translation="MAFEFGILICDKLKENTLEKTNCDVIITGVGKVGVREEDGVLGY EWEETNHRLGLCEIENTMSISDFVYKQIRCEGAYPILPHYVTDVIKYGMVIDRNDHQI RVDRDEKSIGKIQIQPYFGDMYFSPEYYPATFVKRESLPISVDMIRDYIGARMRGIEA RVGRIKEGGGNLLECARRWEKAAYERIENERALRCAVHETDPTYQILKKLRFGFVYPH YYVLNTDYSPTAVTRTSRINDWLLKEKTQGVVKTAEAYSDNAELKTLAERMEEEELTE DIIRAVIRYGAKYATRSGMREDTLSLQELNRYCDSLTTFVHKKKKDEGDDETARTIIR NQWIKGMPRMDFKKEMKITRGPIANWSFFMSIDAFKRNNKVDINPNHQTWKDHIKEVT NQMNRAQQDNHNKPLKIQIDGVSILTNEKYGTVGHWVDWVVDLIMLAQVKMLMKEYKF KRLNSQNLMSGMNKLVGALRCYAYCLILALYYYYGQDIEGFKKGSNSSAILETVIQMF PNFKQEIQANFGINLNIKDKKQSLFVERTMHSDFSSNEEYGYKFVFGWAARGEGVLSN YGDILSDEVEELFTKLRKKEHWDKVVEDPESYFFXXXXQKXXAXVFFSAGYDTDQNVV IDGKMTEGVTYFSKRFVSYWYRVEKITTKYLEFLTEENRKVAQFDFEDYKPMAIGEMG IHASTYKYESLLLGKNRGQKVNDSIALCNYDLALTNFEVSRRQDCCWISSCSAIELSM RANITIAIFRRIEDKRYESFAKILSGLSQHQDLYFPTYKHYYLFVLQKVLRDERRIDL NRMCTELFDIQRRRGILLSFTTLKFWNDSEFLGDTLMMNFLLWVVFEMENVDVDYGKK WHPLLVSSEKGLRVIAVDVFNSMMGVSTSGWLPYVERICSESDMRRRLNADELELKRW FFDYYATLLLERRGEPRLSFKYEGLTTWIGSNCGGVRDYVVQLLPMRKPKPGLLCIAY GDDVNVQWVEHELRDFLTHEGSLGLVVISGKMFVNKSKLRVRNLKIYNRGTLDSLFLI SGGSYTFGNKFLLSKLMAKAE" /product="Outer capsid protein" ORIGIN 1 gtttaattca ccatggcttt cgaattcggc attttgattt gtgataaatt aaaggaaaac 61 actttggaaa aaacgaattg tgacgttatt attacaggag tgggaaaggt aggtgtacgc 121 gaagaggacg gcgtgttagg ttatgaatgg gaagagacca atcataggtt aggattgtgc 181 gaaatagaaa atacgatgtc aatcagtgat tttgtctata agcaaataag atgtgaaggg 241 gcgtatccga tcttaccgca ctatgttaca gacgtcatta aatacgggat ggtaatcgat 301 agaaacgatc atcagatccg agtcgacaga gacgaaaaaa gtattgggaa aatccagatt 361 cagccgtatt tcggcgatat gtatttctcc cccgagtatt atccggcaac tttcgttaaa 421 cgtgaatctc taccaatctc agtagatatg atcagagatt atattggagc taggatgcga 481 gggattgagg ccagggtagg acgaattaag gagggcggtg gaaatttgtt ggagtgcgcg 541 cgtaggtggg aaaaagcggc gtatgagaga attgagaacg aaagagcatt acggtgcgcg 601 gtgcatgaga ctgatccaac gtatcaaatt cttaaaaaac taagattcgg attcgtttat 661 ccgcattatt atgtcttgaa tactgactat agtccgacag ctgtgactag aacttcgcgg 721 attaatgatt ggttgctaaa agaaaagacg caaggagttg tgaagactgc tgaggcatat 781 tccgataacg cggagttgaa aactttagcg gagcgaatgg aagaggagga gctgactgag 841 gatatcatcc gggcggtgat caggtatggg gcgaaatatg ctacgcgctc gggtatgcga 901 gaggatacac tatcacttca ggagttgaat cgctattgcg attctctaac aacttttgtt 961 cataaaaaga agaaggatga aggcgatgat gaaacagcgc gtacgataat tagaaatcag 1021 tggattaagg gaatgcctcg aatggatttc aaaaaagaga tgaaaatcac tcgaggcccg 1081 attgcgaact ggtcgttttt tatgtctata gacgcgttca aaaggaataa taaggtcgac 1141 attaatccga atcaccaaac gtggaaggat catattaaag aagttactaa tcagatgaat 1201 cgtgcgcagc aagataatca caataaacct ctaaaaattc agattgatgg agttagcata 1261 ctcacgaatg aaaagtatgg aaccgttggt cattgggtcg attgggttgt cgatttaatt 1321 atgttagcgc aggtgaagat gttaatgaaa gaatataagt ttaaaagatt aaatagccaa 1381 aatttgatgt cgggtatgaa caaactggtc ggcgcgttga gatgttatgc ttattgcctg 1441 attctcgctt tgtattacta ttacggtcaa gacattgagg gcttcaagaa gggatcaaat 1501 tcttctgcga tattagagac ggttattcaa atgtttccga atttcaaaca ggaaattcaa 1561 gctaatttcg ggataaatct gaacattaaa gataaaaagc aatcgctatt cgttgaacga 1621 acgatgcatt cggatttctc atcgaatgaa gagtacggat ataaatttgt atttggatgg 1681 gcagcaagag gtgaaggagt gttgagtaat tatggagata ttctctctga tgaggttgaa 1741 gaattattca caaaacttag gaagaaagag cattgggata aggttgtgga agatccagag 1801 tcctatttct ttgakgrgcy ctrtcaaaag wcyycagcgg wagtattttt tagtgcaggc 1861 tatgatacag atcagaatgt ggtaatcgat ggaaagatga cagagggggt cacgtacttc 1921 tctaaaagat tcgtatcgta ttggtatcgt gttgagaaga taacaacgaa gtatctcgag 1981 tttttaactg aagagaatcg aaaagtcgcg cagtttgact ttgaggacta taaaccgatg 2041 gctattggag agatgggaat tcatgcttcg acatataagt atgaatcgtt gcttcttgga 2101 aagaacagag gacaaaaagt gaatgattcc attgctttgt gtaactatga tcttgcactt 2161 acgaacttcg aagtttcgag gcgtcaggat tgttgctgga tttcatcgtg tagcgccatt 2221 gagctttcga tgagagccaa catcactatc gctattttta ggagaattga ggacaaaaga 2281 tatgagagtt tcgcgaaaat attatccgga ctttcgcagc atcaagactt atactttcct 2341 acgtataagc attattatct gtttgtatta cagaaggtgt tacgagatga aaggaggata 2401 gatctaaata gaatgtgcac agagttattt gatatacaga ggcgaagagg tatcctcctt 2461 tcgtttacca cgttgaaatt ttggaatgac tcggagtttt taggtgacac gttaatgatg 2521 aattttttac tatgggtggt ttttgaaatg gaaaacgtcg acgtggatta tgggaaaaag 2581 tggcatccac tgctagtatc gtcagagaag gggcttagag taatcgcggt tgacgttttc 2641 aattcaatga tgggagtgtc gacaagcggt tggcttcctt atgttgaacg catctgttct 2701 gagtccgata tgcgcaggcg actgaatgca gatgagttag agttgaagcg atggttcttt 2761 gattactacg cgacattatt acttgaaagg agaggggagc ctcggttgag cttcaagtac 2821 gaaggattga ctacgtggat tggctcgaat tgtggaggag tgcgtgatta cgttgtgcag 2881 ttgcttccta tgcgcaaacc aaagccaggg cttctttgca tcgcttacgg tgatgacgtt 2941 aatgtacagt gggttgaaca tgagttaagg gatttcttga cacatgaagg ctcgctcggc 3001 ttagtggtaa ttagcgggaa gatgtttgtt aataaaagca agttgagggt aaggaatttg 3061 aaaatttaca atcgcggtac gcttgactct ttattcttga tttcgggagg cagctataca 3121 tttggaaata agttcctatt atcgaagctg atggcaaaag ctgaatagcg gagtgacttc 3181 cgctcatggt gatccaactt ac //