LOCUS KP939943 2792 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 7 isolate AHSV-7_1955_14 segment 3, complete sequence. ACCESSION KP939943 VERSION KP939943.1 KEYWORDS . SOURCE African horse sickness virus 7 ORGANISM African horse sickness virus 7 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2792 /mol_type="genomic RNA" /country="South Africa" /segment="3" /collection_date="24-Apr-2014" /db_xref="taxon:86061" /isolate="AHSV-7_1955_14" /organism="African horse sickness virus 7" gene 27..2744 /gene="VP3" CDS 27..2744 /codon_start=1 /protein_id="ALM00023.1" /gene="VP3" /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQ KIRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTE YVLQVNTFYERMSEIGGPVDETDPIGFYALILEKLKFLKSEGAFILQGIATKDYRGAE IADPEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYR IHNVLQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPI NANVIWNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLT PTAVQMNDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTN ITPTMAELLDAALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRADPQTG RGYNGWGVVDVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRML VAAGKDQEAAYLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNLIQGNFG ETDPVVLEVSWASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMM RARVPDTVINATPSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDIQES LAYVLNREAWAIANDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFHTNMIDGAP PIGDVTHYTYAIANLQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEI LTAMPYMYTEEERDGVRMVAFKYATTATAYFLLYNVEYSNTPDTLITVNPTFTMTKIH MRKKIVRRVRAPDVLSQVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" /product="inner core protein" ORIGIN 1 gtttattttc tgctgtgaac tccagaatgc aagggaatga aagaatacaa gataaaaatg 61 agaaagagaa ggcgtatgcg ccatatcttg acggagcgag cgtatcaacg gataatgggc 121 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa gattaggcaa aatcagagcg 181 atatggctgc acatgctccc gatgttgatg gggcgatacc agaggtaatg acgattatca 241 gtggaattaa gggattgcta gaagagaaag attacaaagt gataaatgcg ccaccgaatt 301 cttttcgcac gatcccgatg caaagtacgg agtatgtttt gcaagtgaac acgttttatg 361 agaggatgtc agaaattgga ggaccggtcg atgaaactga tcctattgga ttttatgcat 421 tgatactaga gaaactgaaa ttcttgaaat ccgagggagc tttcatctta cagggaatag 481 ccactaaaga ttataggggc gcagagatcg cggatccaga gataatcggg gttagtttcc 541 aaaatgcgtt gagtcattta gcagcgatag atcgccaaat catacaggat actctcaatg 601 gaatgatcat tgaaaatgga ctagtggcag atagaaatgt ggacgtgttt agagcggcaa 661 tgtcggaccc aatctatcgg atacacaatg tattacaagg gtatattgaa ggtatacaat 721 atggggagtt acgtgaatca gtcaattggt tgatgaggct tggactaagg aaaagaatcg 781 agtttgccaa cgatttcttg actgatttca ggcgcgctga cactatttgg ataatatcac 841 aaaggttgcc gattaatgct aatgtaattt ggaatgttcc aagatgtcat atagcaaatc 901 taatcacaaa tgtcgcgtta tgcttaccga ccggagagta tttgatgccc aacccaagaa 961 ttaattcgat cacaatcacg cagcgtatca ctcagactaa tccattttca ataatttcag 1021 gtttaacccc aacagcggtt cagatgaatg atgttagaaa aatatatctt gcgttgatgt 1081 ttcccaacca aattattctg gatataaaac cggacagctc gcatgcggta gatccagttt 1141 tacgaatggt tgcgggagta ttgggccatg tgatgtttac ttacggaccg atcatgacaa 1201 acataactcc aacgatggct gaattgcttg atgctgcgct gagcgattat ttattgtaca 1261 tgtataataa tcggattccg ataaattatg gtccaacagg tcaaccccta gattttcgca 1321 ttggagcaag aaatcagtat gattgtaatg ctttccgagc ggatccgcaa acgggtcgag 1381 gttacaacgg gtggggggta gttgatgttc agagagtcca gccgagtcca tatgatcacg 1441 ttcagcgtgt aatccgttac tgtgacattg attcaaggga aatcatagat ccaagaacct 1501 atgggatgaa tatgacctat ccaatatttc gggaaatgct tagaatgtta gtcgctgcgg 1561 gaaaagatca agaagcagct tatttgagac agatgctgcc ttttcatatg attcgttttg 1621 cgcgaataaa tcaaattata aatgaagatt tgctcagtgc tttctctttg ccagatcaaa 1681 atttcgatgt ggttctacat aacttgatac aaggtaattt tggagaaaca gacccggtag 1741 ttttggaggt gagttgggct tcgatctggt tcgcttttgt gaggcgtttc gaacccatcg 1801 cccgttcaga tttacttgag gcggctcctc tgattgaggc gagatatgca gctgaattat 1861 ccacgatgca gatggatgta cagcagctga ggatgatgcg agctagagtc ccggacactg 1921 tgattaatgc gacgccaagt caatgctgga aagcagtttt gaagaatgcg cccgaaccaa 1981 ttaaaaattt aatgaactta tctcattctt ttagttttgt gaatgtacga gatattgtaa 2041 ggtggagtca acagagggat attcaggagt cgttagcata tgtcttgaat agggaagctt 2101 gggcgattgc taacgacttt gaagatttga tgttagtgga tcacgtgtat atacagcgca 2161 cgatgttacc tgaaccgagg ctagatgata tcaatgagtt caggcggcaa gggttcttcc 2221 atacgaatat gattgatgga gcgccaccaa ttggagatgt aactcactac acttatgcga 2281 ttgcaaatct acaggcgaat atggggcagt tcagagcagc gatcaggcgt acactggatg 2341 ataacggctg gattcagttc ggtggcatgt tacggaacat caagattaaa ttctttgatt 2401 cacggccgcc cgacgagata ctgacggcaa tgccttatat gtacacagaa gaggagaggg 2461 atggagtgag aatggttgct tttaaatacg caacaactgc aactgcctac ttcttattgt 2521 ataacgttga gtattcaaat acgccagata ctttgatcac ggtaaaccca acatttacga 2581 tgacgaagat tcatatgcgg aagaaaattg tcagacgagt tcgcgctcca gatgtactat 2641 cacaggttaa caaacgttta gttgcgtaca aaggtaagat gcgtctaatg gatgtaacga 2701 aatgcttaaa gactggagtt caactcgcgc gaccaacgat ttagcagcct gaccacctgg 2761 tgaatcgttc tagcgggcag aattacactt ac //