LOCUS KP940119 3964 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 9 isolate AHSV-9_1945_14 segment 1, complete sequence. ACCESSION KP940119 VERSION KP940119.1 KEYWORDS . SOURCE African horse sickness virus 9 ORGANISM African horse sickness virus 9 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3964) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3964) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3964 /mol_type="genomic RNA" /country="South Africa" /segment="1" /collection_date="24-Apr-2014" /db_xref="taxon:10897" /isolate="AHSV-9_1945_14" /organism="African horse sickness virus 9" gene 13..3930 /gene="VP1" CDS 13..3930 /codon_start=1 /protein_id="ALM00208.1" /gene="VP1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYEKAHTAELDIYVRSILK LEDLEPEEEFLRNYAVYDGVHPLKEFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLEVIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVQKSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LGAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKTQGTFKPP IGVKPVKNIKICEELEKKVDGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQIIFMMKSSIIGHRKLKRTIKDGGYRDRRYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQRELQGWRPRQKKFSVTSNEMEITTNYMKMFNVGKIPL HGSALKFFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDRYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="RNA-dependent RNA polymerase" ORIGIN 1 gttatttgag cgatggtcat caccgtgcaa ggtgcagatc tagtcaggag ggctttaaat 61 cgattattta agtatgggag gatagatgga accaagatgt attatgaata ttatagatat 121 tcaagtaaaa tgagggagac taggaggaaa aaagggacga agtataagac agatgatgag 181 tttttagaac gcgagaggga tgcgggaagg ttaaagcttt acgatctaca agtaatacgg 241 gaagcatcct gggaagattt gttgtacgaa aaagctcata ctgctgagtt agatatttat 301 gttagatcaa tcttgaaatt agaagactta gagccagaag aagagttttt gcgaaattac 361 gcggtttatg atggcgtaca cccactgaag gagtttgttg aaatgagggc gaaaaatgaa 421 atgcaaatat ttggtgatat gcctattaag gcgtggatct cagtattgat ggagatttcg 481 cgcgaaacta agcataaacc tcttgggtta atggtggctt cggactttgt tggaagattt 541 ggttcgccct ttgaacagaa ttttagagat ttgtcacaga ttaacgaata tggttattgt 601 tactcaagtc cattattatt tgagatgtgt gtaactgagt caattttaga atttaatatg 661 tggtaccgaa tgcgtgaaga aagaatacag tcgctgaagt ttggattgga agtgattgac 721 cccttcaaat tgatacgaga attttttgag atatgtttgc cgcatccaaa aaagataaac 781 aacacgttgc gctcgccgta ttcgtggttc gttaagaatt ggggtattgg atgtccaaga 841 gtgaaggttt taacatcgat tggaggtgag gatcggaatt caaaggaagt tttttatacc 901 ggttaccatg aaacagagaa cctatactca gaaattgtcc agaaatcaaa attttacaga 961 gaaagcttga agcagaatat gacgaagacg gaggaggcaa ttagctattc gcaaaaactt 1021 ggcaatcatg ggagaacgat gcccatcttt ctaaaaatgt tgaaggcagt atatacgaca 1081 gagtttgatc caacaaaaat aagtcacgtt atattggcgt cattatgcct aagtatacaa 1141 acaataacag ggtatggaag agcatgggta gttaataaat ctagtgattt gggagcgcag 1201 atgaaaccaa gtagtgacaa ctatgtacaa cgcgtatgcg attatacgaa aaataacttt 1261 ataaaagctt atgaagaagc gaggcgaggg ggtgaagaga tagtaatgcc cgaagatatg 1321 tatacatcga ttttacgtct tgctaaaaat acaagttcgg gtttctcaac tagtatcgat 1381 gtttttaaac ggtatggtcc caacgcgaag ggtggacgtg gggaaaagat tcaaataacg 1441 tcgcggatta aagcgttagt cattttcaca aaaggtcatg aaatatttac gccaaagaat 1501 ttagctttga agtataacac tactgaattt ttccaaacga agggttcgag agacgttccg 1561 attaagtcga caagaatagt gtattctatc aatctttcaa ttctagttcc gcagcttata 1621 gtgacattac ccttgaatga gtatttcgca agggcaggag gaagcacttt acctgaaact 1681 caacgtatgg gtgggaagat tatcgttggc gacctggagg ctacaggatc acgtgtgatg 1741 gatgctgctg atacatttag gaattcttca gacccactta acttaaccat tgcgattgat 1801 tacagcgagt ttgatacgca tttaacgcct tataatttca ggaacgggat gctagacggt 1861 atacgagagg cgatgcgcag gtatcaacat ctgagatatg aaggttatac attagacgaa 1921 ttaatagagt ttggatatgg agagggtcgc gtaatgaata cattatggaa tggaaaaagg 1981 cgagtgttta aagtggcgtt tgaggattat gttatgttaa gtgatgagga taaaactcag 2041 ggaaccttca aaccacccat tggggtgaag ccggtaaaga atattaaaat ttgtgaagag 2101 ctggagaaaa aggtggatgg ccgtgatttg attttagttt cgccaacaga tggaagcgat 2161 ctagcgctga ttaacactca tttatccggg gagaactcta cgttgattgc gaacagtcta 2221 cataatctgg cgattggaac agttattcgt gaggaggtaa agcgcatttt tggcgatgat 2281 atttcattta aatcagaaca gtatgttggt gacgatacct tattttacac tgaattgaga 2341 acgcggtcag ttgagcggtt cgattcaatc gtagatacga tttttgaagt tattaagaag 2401 agtggccacg aagcttcgat gtctaaaact cttatagctc ccttttcggt tgaaaaaaca 2461 caaacgcacg ctaagcaggg aatatatgtc ccacaggacc gaatgatgct agtttcgtct 2521 gaacgaagaa aagatataga agatgtggct gggtacctga gatctcaagt tcaaacgttg 2581 acgacaaaaa ttagtcgtgg tttctcgcat gagctggcgc aaatcatttt tatgatgaag 2641 tcgtcgatta tcggacacag gaaactaaag aggacaatta aagatggagg atatagagat 2701 aggaggtacg atgatgacaa ggaggacggt tttactctga taatgttgcg agatccgctt 2761 atcgcttttt atcccgttga atggaatggc tttggagcgc acccggcagc gatgaatata 2821 ataatgactg aagatatgtt cgtagactca gtgatgagag gggaatgcag agcgtggatg 2881 gaacctttag ttaagctcat tgatcagtct cctcccttgt ggaatgaaac gagtgcggat 2941 aaaagaatga ttggtacgga tagtacgatg tcttttttct caagaatggc aaggccagcg 3001 gtacggacgg tattgaccaa cactgaagta ggagatgccg taagaagctt gcctttggga 3061 gatttctctc ctttcaacat ctctaagact atgatgcatt cggcgttatt gaaggaaaag 3121 aacgcccgtt cactacttac cccagcgtat gagatggagt atcaaagaga gttgcaaggc 3181 tggagaccaa gacagaagaa gttctcagtt acgtctaacg agatggaaat tactacaaat 3241 tatatgaaga tgtttaacgt tggcaaaatt ccactacatg gttcggcgtt gaagtttttc 3301 ccagatgtta acttgtcgaa agaatttttc ttacaaaaga gtgttttagg gaatagagag 3361 agtccgagag cgcgaatgtc atacgtcgat agaattgact caatattacg cggcgatgtc 3421 gtaatgcggg ggtttatcac tgcgaatact attatcaata tattggagaa attagggcac 3481 acacattcgg cgagtgactt aaccacgtta tttgagataa tgaatttatc atctagcgtc 3541 gctcagaggc tatcagagta tatcacgacc gaacgcgttc gctttgacgc catgaaactc 3601 tcaaagagag gcatatgtgg tgatgaattc tcaatgtcat tggatgtttg cacacaaacg 3661 atggtagata gatatatacg tgcgccgacg cagtttacca agacggagct tgatgccgta 3721 aatttatatg tcgctcaaca tattatgcta gatgcagcga ctgggttgac gccatcacga 3781 tatgatatta atgtgtctgg agacgaaagg gtacgattta agcagcgcgt tgcccgattt 3841 aacacacact tgcctaagat gcggatggtc aaaagattga ttgaaacaga aaggttgtcc 3901 gcgagattgg ttcagaacca gtttgtctga ttagaactag cacccctcag ctcaaaacac 3961 ttac //