LOCUS KP940143 2792 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 9 isolate AHSV-9_1945_14 segment 3, complete sequence. ACCESSION KP940143 VERSION KP940143.1 KEYWORDS . SOURCE African horse sickness virus 9 ORGANISM African horse sickness virus 9 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 2792) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2792 /mol_type="genomic RNA" /country="South Africa" /segment="3" /collection_date="24-Apr-2014" /db_xref="taxon:10897" /isolate="AHSV-9_1945_14" /organism="African horse sickness virus 9" gene 27..2744 /gene="VP3" CDS 27..2744 /codon_start=1 /protein_id="ALM00042.1" /gene="VP3" /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQ KIRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTE YVLQVNTFYERMSEIGGPVDETDPIGFYALILEKLKFLKTEGAFILQGIATKDYRGAE IADPEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYR IHNVLQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPI NANVIWNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLT PTAVQMNDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTN ITPTMAELLDAALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRADPQTG RGYNGWGVVDVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRML VAAGKDQEAAYLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNLIQGNFG ETDPVVLEVSWASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMM RARVPDTVINATPSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDVQES LAYVLNREAWAIANDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFHTNMIDGAP PIGDVTHYTYAIANLQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEI LTAMPYVYTEEERDGVRMVAFKYATTATAYFLLYNVEYSNTPDTLITVNPTFTMTKIH MRKKIVRRVRAPDVLSQVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" /product="inner core protein" ORIGIN 1 gtttattttc tgctgtgaac tccagaatgc aagggaatga aagaatacaa gataaaaatg 61 agaaagagaa ggcgtatgca ccatatcttg acggagcgag cgtatcaacg gataatgggc 121 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa gattaggcaa aatcagagcg 181 atatggctgc acatgctccc gatgttgatg gggcgatacc agaggtaatg acgataatca 241 gtggaattaa gggattgctg gaagaaaaag attacaaagt gataaatgcg ccaccgaatt 301 cttttcgcac gatcccgatg caaagtacgg agtatgtttt gcaagtgaac acgttttatg 361 agaggatgtc agaaattgga ggaccggtcg atgaaacgga tcctattgga ttttatgcat 421 tgatactaga gaaactgaaa tttttgaaaa ccgagggggc tttcatatta cagggaatag 481 ccactaaaga ttatagaggc gcagagatcg cggatccaga gataattggg gttagtttcc 541 aaaatgcgtt gagtcatttg gcagcaatag atcgccaaat catacaggat actctcaatg 601 gaatgatcat tgaaaatgga ctagtggcag ataggaatgt ggacgtgttt agagcggcaa 661 tgtcagaccc aatttatcgg atacacaatg tattacaagg atatattgaa ggtatacaat 721 atggggagtt gcgtgagtca gtcaattggt tgatgaggct tggactaagg aagagaatcg 781 agtttgccaa cgatttcttg actgatttca gacgcgccga cactatttgg ataatatcac 841 aaaggttacc gattaacgct aatgtaattt ggaatgttcc aagatgtcat atagcaaatc 901 taatcacaaa tgtcgcgtta tgcttaccaa ccggagagta tttgatgccc aacccaagaa 961 ttaattcgat cacaatcaca cagcgtatca ctcagactaa tccattttca ataatttcag 1021 gtttaacccc aacagcggtt cagatgaatg atgttagaaa aatatatctt gcgttgatgt 1081 ttcccaacca aattattctg gatataaaac cggacagctc gcatgcggtg gatccagttt 1141 tacgaatggt tgcgggagta ttaggccatg tgatgtttac ttacggaccg atcatgacaa 1201 acataactcc aacgatggct gaattgcttg atgctgcgct gagcgattat ttattgtaca 1261 tgtataacaa tcggattcca ataaattatg gtccaacagg tcaaccccta gattttcgca 1321 ttggagcaag aaatcagtat gattgtaatg ctttccgagc agacccgcaa acgggtcgag 1381 gctacaacgg gtggggggta gttgatgttc agagggtcca gccgagtcca tatgatcacg 1441 ttcagcgtgt aattcgttac tgtgacattg attcaaggga aatcatagat ccaagaactt 1501 atgggatgaa tatgacctat ccaatatttc gggaaatgct tagaatgtta gttgctgcag 1561 gaaaagatca ggaagcagcc tatttgagac agatgctccc ttttcatatg attcgttttg 1621 cgcgaataaa tcaaattata aatgaagatt tgctcagtgc cttctctttg ccagatcaaa 1681 atttcgatgt ggttctacat aacttgatac aaggtaattt tggagaaaca gacccggtag 1741 ttttagaggt gagttgggct tcgatctggt tcgcttttgt gagacgtttc gaacctatcg 1801 ctcgttcaga tttacttgag gcggctcctc tgattgaggc tagatatgca gctgaattat 1861 ccacgatgca gatggatgta cagcagctga ggatgatgcg agctagagtt ccggacactg 1921 tgattaatgc gacgccaagc caatgctgga aagcagtttt gaagaatgcg ccagagccaa 1981 ttaaaaattt aatgaactta tctcattctt ttagttttgt gaatgtacga gatattgtaa 2041 ggtggagtca acagagggat gttcaggagt cgttagcata tgtcttgaat agggaagctt 2101 gggcgattgc taatgacttt gaagatttga tgttggtgga tcacgtgtat atacagcgta 2161 cgatgttacc tgaaccgagg ctagatgata tcaacgagtt caggcggcaa gggtttttcc 2221 atacgaatat gatcgatgga gcgccaccaa ttggagatgt gactcactac acttatgcga 2281 ttgcaaatct acaggcgaat atggggcagt tcagagcagc gatcaggcgt acactggatg 2341 ataacggttg gattcagttc ggtggtatgt tacggaacat caagattaaa ttttttgatt 2401 cacggccgcc cgacgagata ctgacggcaa tgccttatgt gtacacagag gaagagaggg 2461 atggagtgag aatggtcgct tttaaatacg caacaactgc gactgcctac ttcttattgt 2521 ataacgttga gtattcaaat acgccagata ctttgatcac agtaaatcca acgtttacga 2581 tgacgaaaat tcatatgcgg aagaaaattg tcagacgagt tcgcgctcca gatgtactat 2641 cacaggttaa caaacgttta gtcgcataca aaggtaagat gcgtctaatg gatgtaacga 2701 aatgcctaaa gactggagtt caactcgcgc gaccaacgat ttagcagcct gaccacctgg 2761 tgaatcgttc tagcgggcag aattacactt ac //