LOCUS KP940133 3202 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 9 isolate AHSV-9_22L_03 segment 2, complete sequence. ACCESSION KP940133 VERSION KP940133.1 KEYWORDS . SOURCE African horse sickness virus 9 ORGANISM African horse sickness virus 9 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3202) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3202) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3202 /mol_type="genomic RNA" /country="South Africa" /segment="2" /collection_date="14-Apr-2003" /db_xref="taxon:10897" /isolate="AHSV-9_22L_03" /organism="African horse sickness virus 9" gene 13..3171 /gene="VP2" CDS 13..3171 /codon_start=1 /protein_id="ALM00124.1" /gene="VP2" /translation="MAFEFGILQTDKIRENTLEKTNCDVILTKENRVRMKEVEGVKGY YWEDTDHRLGLCEVEHTVSVRDFVYKQTKCEGSYPVVPLYMIDAIKYGRMIDRNDHQI RVDKDDKILSKIQVQPYLGDAYFSPEYYIATFFKREPLPIHVDMIRDYIGKRINYFER ELSGGVRDANLEMIVEKWKDNTYKRIEGEKATMCVRHEPDSVLQMLKKMRFGMLYPNY YMLNTDYIVTESSKEAPLNRWLVKEKTVGKVKAAEAFAGNSLLKSLASRMEDEELSRE IIIAVINYGSKFGTRSGKKKDLMTIDKLEKYCDSLTTFVHKKKRDEGDDETARAIIRN QWIKGMPSMNLKKEMKVSRGPIQNWSFFMSLEMFKRNNKVDIDPNHDTWKNHVKEIRE RMQKEQSANSNSPLKIQVDGVSLSTGEFYGTVEHWIDWVVDLIMLAQVKRLIKEYKFV RLETSNLMAGMNKLVGALRCYAYCLILALYDFYGADIEGFEKGSNSSAIVETVVQMFP NFKQEIQANFGINLNIKDKKQALFVRMDMDSEFSEDEQKGYMFEYGWAKREEQIWSNY GDILTDLVEQLYKSILNHEEWEKIVDDPEKYFYDDLFNASPETAFISKGYDPDNNIVI EGKVGQDVTYFSKRFVSYWYRVRQVQTSKGAERRSIEDVKYREFDIESFKPYAIGEIG IHASTYKYQDLLAGRNRGEKVKDSQALVWYDFALTNYTLVRPQDRCWIMSCTDCEYTL RFATITMIFERLSEEADLSYHDILLKVREYPIQSFASYKHFYVRVLQHVFRDNQEIDV LEFCTRMLDPRTREAGLNKFSRFRQWRESEFLIDALKMNFLLWVVFELENIDVDYSKK RHPLLISTDKGLRVVSVDLFNSMLSVSLSGWIPYVERVCERSEAKRRLNADELKLKNW FIAYYVTLPLLRRAEPRMSFKYEGITTWIGSNCGGVRDYLIQMLPARKPKPGVLILAY GAEINVAWLNHALRDILSLEGSLGIIIVSDGSVVNKSKLRVRDMKIYNRGEVDRLILI SSGDYTFGNKYLLSKLMAKIEQ" /product="major outer capsid protein" ORIGIN 1 gtttaattca ccatggcgtt cgagttcgga atacttcaga cggacaaaat tagagagaat 61 acactcgaaa aaacaaattg tgatgtgatt cttacgaaag aaaatagagt gcggatgaaa 121 gaggtcgaag gagtgaaagg atattattgg gaggacaccg atcacaggtt aggtttatgt 181 gaggtcgaac atactgtgtc tgtgagggat tttgtgtata aacaaacgaa atgtgaagga 241 tcatatccgg ttgtgccttt atacatgatt gatgcaatta aatatggacg aatgattgac 301 aggaacgacc accaaattag agtagacaaa gatgataaaa ttctatctaa aatacaagta 361 cagccgtatt taggcgacgc ttatttttcg ccagagtatt acattgctac cttctttaaa 421 agagaaccgc tgccaattca tgtggatatg attcgggatt atatcggaaa acgaattaat 481 tattttgagc gagaattaag tggtggggtg cgagatgcaa atttagagat gatagttgag 541 aagtggaaag ataatactta taaaaggatt gaaggtgaga aagcgacgat gtgcgtgaga 601 catgaaccag actcagtgct acagatgttg aaaaagatga ggtttgggat gttatatcca 661 aactactata tgctgaatac agattatata gttactgaat caagtaagga ggcgccgtta 721 aatcgatggt tagtgaagga gaaaacagtt gggaaagtta aagcggccga agcttttgcg 781 ggtaattcgt tattaaaaag cttggcgagc cggatggagg acgaggagtt gagtcgagaa 841 ataataattg cagtgatcaa ttatggttcg aaatttggaa ctagatctgg aaagaagaag 901 gatttgatga ctattgataa gcttgaaaaa tattgtgatt cgttgacgac gttcgtccac 961 aaaaagaagc gtgacgaagg tgacgatgaa acagctaggg ctatcattag aaaccaatgg 1021 attaagggga tgccgagtat gaatttgaaa aaagaaatga aagtttcgcg tggtcctatt 1081 caaaattggt cgtttttcat gtccctagag atgtttaaac gtaataacaa agttgatatt 1141 gatccgaatc atgatacgtg gaaaaatcac gttaaagaga tcagggagag gatgcagaaa 1201 gaacagagcg cgaattctaa ttcaccctta aagatccagg ttgatggggt cagtttatca 1261 accggtgaat tctacggtac ggttgaacat tggatagatt gggttgttga tttaattatg 1321 ttagcacagg tgaaacgatt aatcaaggag tacaagtttg taagattgga aacctcgaac 1381 ttaatggcgg gaatgaataa attagttgga gccttgcgct gctacgctta ttgcttgatc 1441 ttagctctct atgattttta tggcgcagat attgaaggtt ttgagaaggg ttcgaactca 1501 tccgcgattg tggagacggt tgtacagatg ttcccgaact tcaagcagga gattcaagct 1561 aattttggta taaatctaaa tatcaaagat aaaaaacagg cgttgttcgt caggatggat 1621 atggattcag agtttagtga agatgagcag aagggatata tgtttgagta tggatgggcg 1681 aagagagaag agcaaatatg gtcaaattat ggtgacatat taactgactt ggttgaacag 1741 ctttataaga gcattttgaa tcatgaggag tgggagaaaa tcgttgatga cccagaaaag 1801 tatttctatg atgatctttt taacgcatca ccagagacgg cttttattag caaaggttat 1861 gatcctgaca ataatatcgt tattgaggga aaggtaggtc aagatgttac ttatttttcg 1921 aaacggtttg tatcatattg gtatcgagtt cgacaggttc agacctcaaa gggtgctgag 1981 aggagatcga ttgaggatgt caaatatagg gagtttgata tagaaagttt taagccttac 2041 gcgattggtg agatcggtat tcacgcatca acttacaaat atcaggatct attagcgggg 2101 cgtaatcgcg gagagaaagt gaaggattcg caagcgctcg tgtggtatga tttcgcttta 2161 actaactaca cgctagtgcg accacaagat agatgttgga taatgtcgtg tactgattgt 2221 gaatacactt tgagatttgc aacgatcact atgatattcg aacgtttatc tgaggaagct 2281 gatctctctt atcatgatat cttattgaag gtccgcgaat atccgatcca atcattcgct 2341 tcgtataaac atttctatgt tcgcgtcttg cagcacgttt ttagagataa ccaagaaatc 2401 gacgtattag agttctgtac taggatgctc gatccgagga cacgtgaagc ggggttaaat 2461 aagttctcaa ggtttagaca atggagagaa tcggaattct tgatagatgc tcttaaaatg 2521 aatttccttt tgtgggtggt cttcgaactg gaaaatatag atgttgatta tagtaagaaa 2581 aggcatcctt tactaatatc taccgacaaa gggttaagag tagtctcagt tgatcttttt 2641 aattctatgc ttagcgtttc cctgagtggg tggatcccat atgttgaaag agtgtgtgaa 2701 cgctcggaag ctaaaagaag attgaatgcg gatgaattga aactaaagaa ctggtttatt 2761 gcgtattatg tcactttgcc tctgttaagg cgtgcggaac caaggatgag ctttaagtat 2821 gagggaatta caacgtggat tggttcaaat tgcggggggg tacgagacta tctgattcag 2881 atgctcccag caagaaaacc gaaaccgggc gttttaatct tagcttatgg tgcggagatt 2941 aacgtagcgt ggttgaacca tgcgctacgt gatatacttt cgctagaggg atcgttaggg 3001 ataattattg tgagtgacgg ctcagtggtg aataagagca agctccgcgt aagggatatg 3061 aagatatata atagggggga ggtggacaga ttaattttga tttcgagtgg cgattacaca 3121 tttgggaata aatatctctt atcgaaacta atggccaaga tcgaacagta gcgtgactgc 3181 tactccatgt gaatacactt ac //