LOCUS       KP940169                1748 bp    RNA     linear   VRL 30-JUN-2016
DEFINITION  African horse sickness virus 9 isolate AHSV-9_22L_03 segment 5,
            complete sequence.
ACCESSION   KP940169
VERSION     KP940169.1
KEYWORDS    .
SOURCE      African horse sickness virus 9
  ORGANISM  African horse sickness virus 9
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     The dynamics of African horse sickness virus evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics,
            Agricultural Research Council - Onderstepoort Veterinary
            Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng
            0110, South Africa
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0
            Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="South Africa"
                     /segment="5"
                     /collection_date="14-Apr-2003"
                     /db_xref="taxon:10897"
                     /isolate="AHSV-9_22L_03"
                     /organism="African horse sickness virus 9"
     gene            36..1682
                     /gene="NS1"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ALL99869.1"
                     /gene="NS1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNVATDNGSRTNADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKLS
                     RWGQFGICYYDRTNVDGLIPYDEIGLAQAIDGLKDLIEGRLPVCPYTGANGRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWKLYPRLLRQRFAIEDATEGVIHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMVDLALLDTIPVVDSKIAELTGGTDVFYTRAYVHADNHKVPNVRDLMMNEVF
                     RKIDDHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKQTARGRYIDWDDLGTFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein 1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga taggttcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggttgtttgg agagatttcc gaacaaatag
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatgttgct acagataatg gctcacgcac aaatgcagat aaactagtgg
      241 ctttagcttt gcgagcactc ttagatagac aaactatttg gacttgtgtc atcaaaaatg
      301 cggattatgt tagtcaatat gctgatgagc agatggagga agaagttaat aagctgtatg
      361 atgtctatct ccagagcggg acgagagagg aatttgaagg atttagacag aggaatagac
      421 cgagtagagt tgtgatggat gatagctgct caatgctctc atatttttac attccaatga
      481 atcaagggaa cccagctcca gttgcgaagc ttagccgatg gggtcaattt ggaatttgtt
      541 actatgatag aacaaatgtt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctatagatgg cctaaaggat ctgattgaag ggcgattgcc cgtttgccct tatactggag
      661 cgaatggtag aattaatgct gttttacatt taccattaga gatggaggtg attatggcgg
      721 tgcaggaaaa tgcgacacaa ttaatgcgta gagcggcaca ggatttcaaa ttcatcacac
      781 atgctgggtg gaagctatat ccaagattgt tgcgacaacg gttcgcgatc gaggacgcta
      841 cggagggggt gattcatcat gtgatgctag gccatttaag atattatgat gaagatacaa
      901 gtatcgtgaa gtatcgcttc cttaacgatg gatctttaga ttggaggact tggacaatcc
      961 ctttacatct gatgcggaca gcaaggttgg gacatctgca accggaatca attttagtct
     1021 ttatgcataa aaagctcaca tgtcaggtat gctttatggt tgacctcgct ctgcttgaca
     1081 caatcccagt ggttgattca aagattgctg aactaacagg aggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacaatcaca aagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaagatc gatgatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac tgtaactgca attcaaattc agaggtcgat cagaggtgat gggcagtggg
     1321 atactccgat gtttcaccaa tcaatggctc tgttaacacg attgattgtt tattggttaa
     1381 cggatgtgac tgagagaagt gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agcaaacggc tcgaggtaga tatattgatt gggatgatct tgggacattc atgaagaatg
     1501 tcttggatgg aagagatttg actgttttgg aagatgagac atgttttatt tcgatgatga
     1561 ggatggcgat gttgcatgtg caaagatcca aggtggtgtg cgcaaccgtg ttggaggcgc
     1621 cattagaaat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//