LOCUS KP940122 3965 bp RNA linear VRL 30-JUN-2016 DEFINITION African horse sickness virus 9 isolate AHSV-9_22S_03 segment 1, complete sequence. ACCESSION KP940122 VERSION KP940122.1 KEYWORDS . SOURCE African horse sickness virus 9 ORGANISM African horse sickness virus 9 Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE The dynamics of African horse sickness virus evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3965) AUTHORS van Schalkwyk,A., Ngoveni,H.G., Mokotoan,N. and Koekemoer,O.J.J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2015) Molecular Epidemiology and Diagnostics, Agricultural Research Council - Onderstepoort Veterinary Institute, Old Soutpan Road, Onderstepoort, Pretoria, Gauteng 0110, South Africa COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /country="South Africa" /segment="1" /collection_date="14-Apr-2003" /db_xref="taxon:10897" /isolate="AHSV-9_22S_03" /organism="African horse sickness virus 9" gene 14..3931 /gene="VP1" CDS 14..3931 /codon_start=1 /protein_id="ALM00211.1" /gene="VP1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTNDEFLERERDAGRLKLYDLQVIREASWEDLLYENVHTAELDIYVRSILK LEDLEPEEEFLRNYAVYDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLEVIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVQRSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYATEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGARGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKTQGTFKPP IGVKPVKNIKICEELEKKADGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQIIFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVGKIPL HGLTLKFFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDRYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="RNA-dependent RNA polymerase" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aagtatggga ggatagatgg aaccaagatg tattatgaat attacaggta 121 ttcaagtaag atgagggaga ctaggaggaa aaaagggacg aagtataaga caaatgatga 181 gtttctagaa cgtgagaggg atgcgggaag gttaaagctt tacgatctac aagtgatacg 241 ggaagcatcc tgggaagatt tgttgtacga aaatgttcat actgctgagt tagatattta 301 tgttagatca atcttgaaat tagaggactt agagccagaa gaagagtttt tgcgaaatta 361 tgcggtttat gatggcgtac acccactgaa ggattttgtt gaaatgaggg cgaaaaatga 421 aatgcaaatt tttggtgata tgcctattaa ggcgtggatc tcagtattaa tggagatttc 481 gcgcgaaact aagcataaac ctcttgggtt aatggtggct tcggactttg tcggaagatt 541 tggttcgccc tttgagcaga attttagaga tttgtcacag attaacgaat atggttattg 601 ctactcaagt ccattattat ttgagatgtg tgtaactgag tcaattttgg aatttaatat 661 gtggtaccga atgcgtgaag aaagaataca gtcgctgaag tttggattgg aagtgattga 721 tcctttcaaa ttgatacgag aatttttcga aatatgtttg ccgcatccta aaaagataaa 781 caacacgttg cgctcaccgt attcgtggtt tgttaagaat tggggtattg gatgtccgag 841 agtgaaggtt ttaacatcga ttggaggtga ggatcgaaat tcaaaggagg ttttttatac 901 cggttaccat gaaacagaga acctatactc agagattgtc cagagatcaa aattttacag 961 agaaagcttg aagcagaata tgacaaagac ggaggaggca attagctatt cgcaaaaact 1021 cggcaatcat gggagaacga tgcccatttt tctgaaaatg ttaaaagcag tatatgctac 1081 agagtttgat ccaacaaaaa taagtcacgt tatattggcg tcactatgcc taagtataca 1141 aacaataaca gggtatggaa gagcatgggt agttaacaaa tctagtgatt tggaagcgca 1201 aatgaaacca agtagtgaca actatgtaca acgcgtatgt gactatacga aaaataactt 1261 tataaaagcc tatgaagaag cgaggcgagg gggtgaagag atagtaatgc ccgaagatat 1321 gtatacatcg atcttacgtc ttgctaaaaa tacaagctcg ggtttttcaa ctagtattga 1381 tgtttttaaa cggtatggtc ccaacgcgaa gggtgcacgt ggggaaaaga ttcaaataac 1441 gtcgcgaatt aaagcgttag tcattttcac aaaaggccat gaaatattta cgccaaaaaa 1501 cctagccttg aagtataaca ccactgaatt ttttcaaacg aagggttcga gagacgttcc 1561 gattaagtcg acaagaatag tgtattctat caatctctca attctagttc cgcagcttat 1621 agtgacatta cctttgaatg agtatttcgc aagggcggga ggaagtactt tacctgaaac 1681 tcaacgtatg ggtgggaaaa ttatcgttgg cgatctggag gctacaggat cgcgtgtgat 1741 ggatgctgct gatacattta ggaattcttc agacccactt aacttaacca tcgcgattga 1801 ttacagcgag tttgatacgc atttaacacc ttataatttc aggaacggga tgctagacgg 1861 catacgagag gcgatgcgca gatatcaaca tctgagatat gagggttata cattagacga 1921 attaatagag tttggatatg gagaaggtcg cgtaatgaat acattatgga atggaaaaag 1981 gcgagtgttt aaagtggcgt ttgaggatta cgttatgtta agtgatgagg ataaaactca 2041 gggaaccttc aaaccaccca ttggggtgaa gccggtaaag aatattaaaa tttgtgaaga 2101 gctggagaaa aaggcggatg gccgtgattt gattttggtt tcgcctacag atggaagcga 2161 tctggcgctg attaacactc atttatccgg ggagaactct acgttgattg cgaacagtct 2221 acataatcta gcgattggaa cagttattcg tgaggaggta aagcgcattt ttggggatga 2281 tatttcattt aaatcagaac agtatgttgg tgacgacacc ttattttaca ctgaattgag 2341 aacgcggtca gttgagcggt tcgattcaat cgtagatacg attttcgaag ttattaagaa 2401 gagtggccac gaagcttcga tgtctaaaac tcttatagct cctttttcgg tcgaaaaaac 2461 acaaacgcac gctaagcagg gaatatatgt cccacaggat cgaatgatgc tagtttcgtc 2521 tgaacgaaga aaagatatag aggatgttgc tgggtacctg agatctcaag tccaaacgtt 2581 gacgacaaaa attagtcgtg gcttctcgca tgagctagcg cagatcattt ttatgatgaa 2641 gtcgtcgatt atcggacata ggaaactaaa gaggacaatt aaagatggag gatatagaga 2701 taggaagtac gatgatgaca aggaggatgg cttcactctg ataatgttgc gagatccgct 2761 tattgctttt tatcccgttg aatggaatgg ctttggagcg cacccggcag cgatgaatat 2821 aataatgact gaagatatgt tcgtagactc agtgatgaga ggggaatgta gagcatggat 2881 ggaaccttta gttaagttga ttgatcaatc tcctcccttg tggaatgaaa cgagtgcgga 2941 taaaagaatg attggtacgg atagtacgat gtcttttttc tctagaatgg caaggccagc 3001 ggtacggacg gtgttaacca acactgaggt gggagatgcc gtaagaagtt tgcctttagg 3061 agatttctct cctttcaata tttccaagac tatgatgcat tcggcgttat tgaaggaaaa 3121 gaatgcccgt tcattactta ccccagcgta tgagatggag tatcaaaaag agttgcaagg 3181 ttggagacca aggcagaaga agttcttagt tacatctaac gagatggaaa ttactacaaa 3241 ttatatgaag atgtttaacg ttggcaagat tccactacat ggtttgacgt tgaagttttt 3301 cccagatgtt aacttgtcga aagaattttt cttacaaaag agtgttttag ggaataggga 3361 gagtccgaga gcgcgaatgt catacgtcga tagaattgac tcaatactac gcggcgatgt 3421 cgtaatgcgg gggtttatca ctgcgaatac tattatcaat atattggaga aattagggca 3481 cacacattcg gcgagtgatt taaccacgtt atttgagata atgaatttgt catcaagcgt 3541 cgctcagagg ctatcagagt atattacgac cgaacgcgtt cgctttgacg ctatgaaact 3601 ttcaaagaga ggcatatgtg gtgacgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 gatggtagat agatatatac gtgcgccgac gcagttcact aagacggagc ttgatgccgt 3721 aaatttatat gttgctcaac atattatgct agatgcagcg actggattga cgccatcacg 3781 atatgatatt aatgtgtctg gagacgaaag agtgcgattt aagcagcgtg ttgcccgatt 3841 taacacacac ttgcccaaga tgcggatggt caaaagattg attgaaacag aaaggttgtc 3901 tgcgagattg gttcagaacc agtttgtctg attagaacta gcacccctca gctcaaaaca 3961 cttac //