LOCUS NC_006021 3965 bp RNA linear VRL 22-MAR-2010 DEFINITION African horsesickness virus segment 1, complete genome. ACCESSION NC_006021 VERSION NC_006021.1 DBSOURCE BioProject accession PRJNA14937 KEYWORDS RefSeq. SOURCE African horse sickness virus ORGANISM African horse sickness virus Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS Vreede,F.T. and Huismans,H. TITLE Sequence analysis of the RNA polymerase gene of African horse sickness virus JOURNAL Arch. Virol. 143 (2), 413-419 (1998) PUBMED 9541625 REFERENCE 2 (bases 1 to 3965) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-JUL-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3965) AUTHORS Vreede,F.T. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Biochemistry, Onderstepoort Veterinary Institute, Zoutpan Road, Onderstepoort, Gauteng 0110, South Africa COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to U94887. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /db_xref="taxon:40050" /serotype="9" /segment="1" /organism="African horse sickness virus" /note="AHSV-9" gene 14..3931 /locus_tag="AHSVs1gp1" /db_xref="GeneID:2943147" /gene="VP1" CDS 14..3931 /locus_tag="AHSVs1gp1" /protein_id="YP_052966.1" /gene="VP1" /db_xref="GeneID:2943147" /codon_start=1 /product="RNA-dependent RNA polymerase" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENVHTAELDIYVRSILK LEDLEPEEEFLRNYAVYDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLEVIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCSR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVLKSKFYRESLKQNMTKTEEAITYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKVQGTFKPP IGVKPVKNIKICEELEKKADGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYIPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQIIFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNSEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVGKIPL HGLALKFFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDRYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aagtatggga ggatagatgg aactaagatg tattatgaat attacagata 121 ttcaagtaaa atgagggaga ctaggaggaa aaaagggacg aagtataaaa cagatgatga 181 gtttttagag cgcgagaggg atgcggggag gttgaagctt tatgatctac aagtgatacg 241 ggaagcgtct tgggaagatt tgttgtatga aaatgttcac actgctgagt tagatattta 301 tgttagatca atcttgaaat tagaggactt agagccagaa gaagaatttt tgcgaaatta 361 cgcagtttat gatggtgtgc acccgctgaa ggatttcgtt gaaatgagag cgaaaaatga 421 aatgcagatt tttggtgata tgcccattaa ggcgtggatc tcagtattga tggaaatctc 481 gcgcgaaaca aagcataaac ctcttgggtt aatggtagct tcggattttg tcggaagatt 541 tggttcgcct tttgaacaga attttagaga tttgtcacag attaacgaat atggttattg 601 ttactcaagt ccattattat ttgagatgtg tgtaactgag tcaattttgg aatttaatat 661 gtggtaccgg atgcgtgaag aaagaataca gtcgctgaaa ttcggattgg aagtgattga 721 tcctttcaaa ctgatacgag aattttttga aatatgtttg ccgcatccta agaagataaa 781 caacacgttg cgctcaccgt attcgtggtt tgtcaagaat tggggtattg gatgttcgag 841 agtgaaggtt ttaacatcga ttggaggtga ggatcggaat tcaaaggaag ttttttatac 901 tggttaccat gaaacagaga acctatactc agagattgtc ctgaaatcga aattttatag 961 agaaagcttg aaacaaaata tgacgaaaac ggaagaggcg attacgtatt cgcaaaaact 1021 tggcaatcat gggagaacga tgcccatttt cctgaaaatg ttaaaagcgg tatatactac 1081 agagtttgat ccaacaaaaa taagtcacgt tatattggcg tcattatgct taagtataca 1141 aacaataaca ggatatggga gggcatgggt agttaacaaa tctagtgatt tggaagcgca 1201 gatgaaacca agtagtgaca actatgtaca gcgcgtatgc gattatacaa aaaataactt 1261 tataaaagcc tatgaagagg cgaggcgagg gggtgaagag attgtaatgc ctgaagatat 1321 gtatacatcg attttacgtc tcgctaaaaa tacaagctcg ggtttctcaa ctagtattga 1381 tgtttttaag cggtatggcc ccaacgcgaa gggtggacgt ggagaaaaga ttcaaattac 1441 gtcgcggatt aaagcgttag tcatttttac aaaaggtcat gaaatattta cgccaaaaaa 1501 cctagcttta aagtataaca ctactgaatt tttccaaacg aagggttcga gagatgttcc 1561 gattaagtcg acgagaatag tgtattccat caacctctca attttagttc cgcagctcat 1621 agtgacatta cctttgaatg agtattttgc aagggcggga ggaagtactt tacctgaaac 1681 tcaacgtatg ggtggaaaaa ttatcgttgg agatttggag gctacaggat cgcgtgtgat 1741 ggacgcagct gatacattta ggaattcttc agatccactt aacttaacta tcgcgattga 1801 ctacagcgaa tttgatacgc atttaacacc ttataatttc aggaacggga tgctagatgg 1861 tatacgagaa gcgatgcgca gatatcaaca tctgagatat gagggttata cattagacga 1921 attaatagag tttggatatg gagagggtcg cgtaatgaat acattatgga atggaaagag 1981 gcgagtgttt aaagtggcgt ttgaggatta cgttatgttg agtgatgaag ataaagttca 2041 gggaaccttt aaaccaccca ttggggtgaa gccggtaaag aatattaaaa tttgtgaaga 2101 gctggagaaa aaggcggatg gccgtgattt gattttggtt tcgcctacgg atggaagcga 2161 cctagcgctg attaacactc atttatccgg ggagaactcc acgttgattg cgaacagttt 2221 acataatcta gcgattggaa cagttattcg tgaggaggtt aaacgcattt ttggcgatga 2281 tatttcattt aaatcagaac agtatgttgg tgacgacacc ttattttaca ctgaattgag 2341 aacgcggtca gttgagcggt tcgattcaat cgtggatacg atttttgaag tcattaagaa 2401 gagtggccac gaagcctcaa tgtcaaaaac tcttatagct cccttttcgg tcgagaaaac 2461 acagacgcac gctaagcagg gaatatatat tccacaggat cgaatgatgc tagtttcgtc 2521 cgaacgaaga aaagatatag aggatgttgc tgggtacctg agatctcaag ttcaaacgtt 2581 gacaacaaaa attagtcgtg gtttctcgca tgagctggcg caaatcattt ttatgatgaa 2641 atcgtcgatt atcgggcata ggaaactaaa gaggacaatt aaggatggag gatatagaga 2701 tagaaaatac gatgatgaca aagaggacgg cttcactctg ataatgttgc gagatccgct 2761 tattgctttt tatcccgttg aatggaacgg ctttggagcg cacccggcag cgatgaatat 2821 aataatgact gaagatatgt tcgtagactc agtgatgaga ggggaatgta gagcgtggat 2881 ggaaccctta gttaagttga ttgatcaatc tcctcccttg tggaacgaaa cgagcgcgga 2941 taaaagaatg attggtacgg atagtacgat gtcttttttc tcgagaatgg caaggccagc 3001 ggtacgaacg gtattaacca actctgaggt gggagatgcc gtaagaagtt tgcctctggg 3061 agatttctct cctttcaata tctctaaaac tatgatgcat tcggcgttat tgaaagaaaa 3121 gaatgcccgt tcattactta ccccagcgta tgagatggag tatcaaaaag agttgcaagg 3181 ttggagacca aggcagaaaa agttcttagt tacgtctaac gagatggaaa ttactacaaa 3241 ttatatgaag atgtttaacg ttggtaaaat tccactgcac ggtttggcgt tgaagttttt 3301 cccagatgtt aacttgtcga aagaattttt cttacagaag agtgttttag ggaatagaga 3361 gagtccgaga gcacgaatgt catacgtcga tagaattgac tcaatactac gtggcgatgt 3421 cgtaatgcga gggtttatca ctgcgaatac tattatcaac atattggaga aattagggca 3481 cacacattcg gcgagtgact taaccacatt atttgagata atgaatttgt catcaagcgt 3541 cgctcagagg ctatcagagt acatcacgac cgaacgcgtt cgcttcgatg ccatgaaact 3601 ctcgaagagg ggtatatgtg gtgatgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 gatggtagat agatatatac gtgcgccgac gcagttcact aagacggagc ttgatgccgt 3721 aaacctatat gttgcccaac atattatgtt agatgcagcg actggattga cgccatcacg 3781 atatgatatt aatgtgtctg gagacgaaag ggtgcgattt aagcagcgtg ttgcccgatt 3841 taacacacac ttgcctaaga tgcggatggt taaaagattg attgaaacag aaaggttgtc 3901 cgcgagattg gttcagaacc agtttgtctg attagaacta gcacccctca gctcaaaaca 3961 cttac //