LOCUS KM609465 3965 bp RNA linear VRL 23-SEP-2015 DEFINITION African horse sickness virus segment 1, complete sequence. ACCESSION KM609465 VERSION KM609465.1 KEYWORDS . SOURCE African horse sickness virus ORGANISM African horse sickness virus Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS Potgieter,A.C., Wright,I.M. and van Dijk,A.A. TITLE Consensus Sequence of 27 African Horse Sickness Virus Genomes from Viruses Collected over a 76-Year Period (1933 to 2009) JOURNAL Genome Announc 3 (5), e00921-15 (2015) PUBMED 26358586 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3965) AUTHORS Potgieter,C.A., Wright,I.M. and van Dijk,A.A. TITLE Consensus genome sequence of the nine pathogenic OIE reference strains of African horsesickness virus and comparison of horsesickness virus collected over 75 year period JOURNAL Unpublished REFERENCE 3 (bases 1 to 3965) AUTHORS Potgieter,C.A., Wright,I.M. and van Dijk,A.A. TITLE Direct Submission JOURNAL Submitted (23-SEP-2014) Virology Department, OIE Laboratory for African Horsesickness and Bluetongue, Onderstepoort Veterinary Institute, 100 Old Soutpan Road, Pretoria, Gauteng 0110, South Africa COMMENT GenBank Accession Numbers KM609465-KM609474 represent sequences from the 10 segments of African horse sickness virus HS32/62 1S. ##Assembly-Data-START## Assembly Method :: Lasergene v. 8 Sequencing Technology :: 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /country="Zimbabwe" /segment="1" /collection_date="1962" /host="Equus caballus" /db_xref="taxon:40050" /isolate="HS32/62 1S" /serotype="4" /organism="African horse sickness virus" CDS 14..3931 /codon_start=1 /protein_id="AJC11315.1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENVHTAELDIYVRSILK LEDLEPEEEFLRNYAVCDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLLVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLETIDPFKLIQEFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEIFYTGYHETENLYSEIVLKSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVLNTLWNGKRRVFKVAFEDYVMLSDEDKVQGVFKPP IGVKPVKNIKICEELEKKADGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKISRGFSHELAQLIFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVSKIPL HGLALKFFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDKYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="VP1" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aaatatggga ggatagatgg aactaaaatg tattatgagt attatagata 121 ttcaagtaaa atgagggaga ctaggaggaa gaaaggaacg aaatataaaa cggatgatga 181 gtttttagag cgcgagaggg atgcgggcag gttgaagctt tacgatttac aagtgatacg 241 agaggcatcc tgggaagatt tgctgtacga gaacgttcat actgcagagt tagatatcta 301 cgttagatca atcttgaagt tagaggattt agagccggaa gaggaatttt tgcgaaatta 361 tgcggtttgt gatggtgtgc atccgctgaa agatttcgtt gagatgaggg caaaaaacga 421 aatgcagatt tttggtgata tgcctattaa agcttggatc tcagtattaa tggaaatttc 481 gcgtgaaaca aagcataaac ctcttgggtt attggtggca tcggattttg ttggaagatt 541 cggttcgcct tttgagcaga atttcagaga tttgtcacag atcaacgaat atggttattg 601 ttactcaagt ccattattat ttgagatgtg cgtgactgaa tcaattttgg agtttaatat 661 gtggtaccga atgcgtgaag agagaataca atcactgaaa tttggattgg aaacaattga 721 ccctttcaaa ctgatacaag aattctttga aatatgtttg ccacatccta aaaagataaa 781 caacacgttg cgttcaccgt attcgtggtt cgttaaaaat tgggggatcg gatgtccgag 841 agtgaaagtt ctaacatcta ttggaggtga ggatcgaaac tcaaaggaga ttttttatac 901 tggttatcat gagacagaaa atctatactc agagattgtc ttgaaatcaa agttttatag 961 agagagtcta aagcaaaata tgacaaaaac ggaagaagca attagctatt cgcaaaagct 1021 tggcaatcac gggagaacaa tgcctatttt cctgaaaatg ttaaaagcgg tatatacaac 1081 ggagtttgat ccaacaaaaa taagtcacgt tatactagcg tcattatgct taagcataca 1141 aacgataacg gggtacggga gggcgtgggt agttaacaaa tctagcgatt tggaagcgca 1201 gatgaaacca agtagtgata actatgttca gcgcgtatgt gactatacaa agaataactt 1261 tataaaagcc tatgaggaag cgagacgagg gggtgaagag atcgtgatgc ctgaagatat 1321 gtatacatcg atattacgtc ttgctaaaaa cacaagctca ggcttttcaa ctagtattga 1381 tgtttttaag cggtatggtc ccaacgcgaa aggtggacgt ggagaaaaga tccaaataac 1441 ttcgcggatt aaagcgttag tgattttcac aaaaggccac gaaatattta cgccaaaaaa 1501 tctagctttg aagtataaca ctaccgaatt tttccaaacg aaaggttcaa gagatgtccc 1561 gatcaaatct acgagaatag tgtactctat caatctttca attttagtac cgcagcttat 1621 agtaacgtta cccttgaatg agtatttcgc gagagcagga gggagtactt tgccagaaac 1681 acaacgtatg ggcgggaaaa ttatcgttgg agatttggag gctactggat cacgtgtgat 1741 ggacgctgca gacacattca ggaattcttc ggatccactc aatctaacca ttgcgatcga 1801 ttacagtgaa tttgatacac atttgacgcc ttataacttc agaaatggga tgctagatgg 1861 catacgggag gcaatgcgta gatatcaaca tttgagatat gagggataca cattagatga 1921 attaatagag tttggatatg gagagggtcg cgtgctgaac acattatgga atggaaaaag 1981 gcgagtattc aaagtggcat ttgaggatta tgttatgtta agtgatgaag ataaagttca 2041 gggagttttt aaaccaccta ttggagtgaa gccagtaaag aacattaaaa tttgtgaaga 2101 actggagaaa aaggcagacg gccgtgattt gattttggtt tcacctacgg atggaagcga 2161 tctagcgttg atcaataccc atttatccgg agaaaattcc acgttgatcg caaatagctt 2221 acataacctg gcgattggga ctgttattcg tgaagaagtc aagcgtattt ttggtgatga 2281 tatttcattt aagtcagagc agtacgtcgg tgatgacact ttattctata ctgaattgag 2341 gacgcgatca gtcgagcggt ttgattcaat tgtcgatacg atttttgaag ttattaagaa 2401 gagtggtcac gaagcctcaa tgtcaaaaac tctcatagct cccttttcag tcgaaaaaac 2461 acaaacgcac gccaagcagg gaatatatgt ccctcaggat cggatgatgc tagtttcgtc 2521 tgaacgaaga aaggatattg aggatgttgc agggtacctg agatcccaag ttcaaacatt 2581 gactacgaaa attagtcgtg gtttctcgca tgaattggcg cagctcattt ttatgatgaa 2641 gtcatcgatt atcgggcata ggaagctgaa gagaacgatt aaggatggag ggtacagaga 2701 taggaaatac gatgatgaca aggaggacgg cttcactttg ataatgttgc gagatccact 2761 tattgctttt tatcctgttg aatggaatgg ttttggggcg cacccggcgg cgatgaatat 2821 aataatgact gaagatatgt ttgtggattc agtgatgaga ggggagtgta gggcgtggat 2881 ggaaccttta gttaagttga ttgatcaatc tccgcccctg tggaatgaaa cgagcgcgga 2941 taaaaggatg attggtacgg acagtacgat gtcttttttc tctagaatgg cgaggccagc 3001 ggttcgaaca gtattaacga atactgaggt tggagatgcc gtgagaagtt tgcctctggg 3061 agacttctct cctttcaata tctctaagac tatgatgcat tcggcgctgt taaaggaaaa 3121 gaacgcccgt tcattactca ctccggcgta tgagatggaa tatcaaaaag agttgcaagg 3181 ttggagacca agacagaaga agtttttagt gacatctaac gaaatggaaa tcaccacgaa 3241 ttacatgaaa atgtttaacg tcagtaaaat cccactgcac ggtttggcgt tgaagttttt 3301 cccagatgtt aacttgtcga aggaattttt cttacagaag agcgttttag ggaatagaga 3361 aagtccgaga gcgcgaatgt catatgttga tagaattgac tcaatactac gcggcgatgt 3421 tgtaatgcga gggttcatta ctgcgaatac tatcattaac atattggaga aattgggaca 3481 cacgcactcg gcgagcgatt tgactacgtt attcgaaata atgaacttat catcaagcgt 3541 cgctcagcgg ctatcagagt atatcacgac cgaacgcgtt cgcttcgatg cgatgaaact 3601 atcaaagagg ggcatatgtg gtgacgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 gatggtggat aaatatatac gtgcgccgac acagtttact aaaacggagc tcgacgccgt 3721 aaatttgtat gttgcccaac atattatgtt agatgcggcg acggggttaa cgccatcacg 3781 atatgatatt aatgtatcgg gagacgaaag ggtacgattt aagcagcgcg ttgcccgatt 3841 taacacacat ttacccaaga tgcggatggt caaaagattg atcgaaacgg agaggttgtc 3901 cgcgaggctg gttcagaacc agtttgtctg attagaacta gcaccccaca gctcaaaaca 3961 cttac //