LOCUS FJ196584 3965 bp RNA linear VRL 21-MAY-2009 DEFINITION African horsesickness virus isolate HS 02/07 structural protein VP1 gene, complete cds. ACCESSION FJ196584 VERSION FJ196584.1 KEYWORDS . SOURCE African horse sickness virus ORGANISM African horse sickness virus Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. REFERENCE 1 (bases 1 to 3965) AUTHORS Fasina,F., Potgieter,A.C., Ibironke,A., Bako,B., Bwala,D. and Kumbish,P. TITLE First Report of an Outbreak of African Horsesickness Virus Serotype 2 in the Northern Hemisphere JOURNAL J. Equine Vet. Sci. 28 (3), 167-170 (2008) REFERENCE 2 (bases 1 to 3965) AUTHORS Potgieter,A.C., Page,N.A., Liebenberg,J., Wright,I.M., Landt,O. and van Dijk,A.A. TITLE Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes JOURNAL J. Gen. Virol. 90 (PT 6), 1423-1432 (2009) PUBMED 19264638 REFERENCE 3 (bases 1 to 3965) AUTHORS Potgieter,A.C., Fasina,F. and van der Sluis,R. TITLE Direct Submission JOURNAL Submitted (08-SEP-2008) Virology, ARC-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, Pretoria, Gauteng 0110, South Africa COMMENT GenBank Accession Numbers FJ196584-FJ196593 represent the complete genome of African horsesickness virus isolate HS 02/07. FEATURES Location/Qualifiers source 1..3965 /mol_type="genomic RNA" /country="Nigeria" /host="horse" /db_xref="taxon:40050" /isolate="HS 02/07" /serotype="2" /organism="African horse sickness virus" CDS 14..3931 /codon_start=1 /protein_id="ACI41990.1" /translation="MVITVQGADLVRRALNRLFKYGRIDGTKMYYEYYRYSSKMRETR RKKGTKYKTDDEFLERERDAGRLKLYDLQVIREASWEDLLYENAHTAELDIYVRSILK LEDLEPEEEFLRNYAVYDGVHPLKDFVEMRAKNEMQIFGDMPIKAWISVLMEISRETK HKPLGLMVASDFVGRFGSPFEQNFRDLSQINEYGYCYSSPLLFEMCVTESILEFNMWY RMREERIQSLKFGLEAIDPFKLIREFFEICLPHPKKINNTLRSPYSWFVKNWGIGCPR VKVLTSIGGEDRNSKEVFYTGYHETENLYSEIVQKSKFYRESLKQNMTKTEEAISYSQ KLGNHGRTMPIFLKMLKAVYTTEFDPTKISHVILASLCLSIQTITGYGRAWVVNKSSD LEAQMKPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKNTSSG FSTSIDVFKRYGPNAKGGRGEKIQITSRIKALVIFTKGHEIFTPKNLALKYNTTEFFQ TKGSRDVPIKSTRIVYSINLSILVPQLIVTLPLNEYFARAGGSTLPETQRMGGKIIVG DLEATGSRVMDAADTFRNSSDPLNLTIAIDYSEFDTHLTPYNFRNGMLDGIREAMRRY QHLRYEGYTLDELIEFGYGEGRVMNTLWNGKRRVFKVAFEDYVMLSDEDKTQGTFKPP IGVKPVKNIKICEELEKKVDGRDLILVSPTDGSDLALINTHLSGENSTLIANSLHNLA IGTVIREEVKRIFGDDISFKSEQYVGDDTLFYTELRTRSVERFDSIVDTIFEVIKKSG HEASMSKTLIAPFSVEKTQTHAKQGIYVPQDRMMLVSSERRKDIEDVAGYLRSQVQTL TTKXSRGFSHELAQIIFMMKSSIIGHRKLKRTIKDGGYRDRKYDDDKEDGFTLIMLRD PLIAFYPVEWNGFGAHPAAMNIIMTEDMFVDSVMRGECRAWMEPLVKLIDQSPPLWNE TSADKRMIGTDSTMSFFSRMARPAVRTVLTNTEVGDAVRSLPLGDFSPFNISKTMMHS ALLKEKNARSLLTPAYEMEYQKELQGWRPRQKKFLVTSNEMEITTNYMKMFNVGKIPL HGLTLKLFPDVNLSKEFFLQKSVLGNRESPRARMSYVDRIDSILRGDVVMRGFITANT IINILEKLGHTHSASDLTTLFEIMNLSSSVAQRLSEYITTERVRFDAMKLSKRGICGD EFSMSLDVCTQTMVDRYIRAPTQFTKTELDAVNLYVAQHIMLDAATGLTPSRYDINVS GDERVRFKQRVARFNTHLPKMRMVKRLIETERLSARLVQNQFV" /product="structural protein VP1" ORIGIN 1 gtttatttga gcgatggtca tcaccgtgca aggtgcagat ctagtcagga gggctttaaa 61 tcgattattt aagtatggga ggatagatgg aaccaagatg tattatgaat attacagata 121 ttcaagtaaa atgagggaga ctaggaggaa aaaagggacg aagtataaga cagatgatga 181 gtttttagaa cgcgagaggg atgcgggaag gttaaagctt tacgatctgc aagtaatacg 241 ggaagcatcc tgggaagatt tgttgtacga aaatgctcat actgctgagt tagatattta 301 tgttagatca atcttgaaat tagaggactt agagccagaa gaagagttct tgcgaaatta 361 cgcggtttat gatggcgtac acccactgaa ggattttgtt gaaatgaggg cgaaaaatga 421 aatgcaaatt tttggtgata tgcctatcaa ggcgtggatc tcagtattaa tggaaatttc 481 gcgcgaaact aagcataaac ctcttgggtt aatggtggct tcggactttg ttggaagatt 541 tggttcgccc tttgagcaga attttagaga tttgtcacag attaacgaat atggttattg 601 ttactcaagt ccattattat ttgagatgtg tgtaactgag tcaattttag aatttaacat 661 gtggtatcga atgcgtgaag aaagaataca gtcgctgaag tttggattgg aagcgattga 721 tcccttcaaa ttgatacgag aattttttga gatatgtttg ccgcatccta aaaagataaa 781 caacacgttg cgctcgccgt attcgtggtt tgttaagaat tggggtattg gatgtccgag 841 agtgaaggtt ttaacatcga ttggaggtga ggatcggaat tcaaaggaag ttttttatac 901 cggttaccat gaaacagaga acctatactc agaaattgtc cagaaatcaa aattctacag 961 agaaagcttg aagcagaata tgacgaagac ggaggaggca attagctatt cgcaaaaact 1021 tggcaatcat gggagaacga tgcccatctt tctaaaaatg ttgaaggcag tatatactac 1081 agagtttgat ccaacaaaaa taagtcacgt tatattagcg tcattatgcc taagtataca 1141 aacaataaca gggtatggaa gagcatgggt agttaataaa tctagtgatt tggaagcgca 1201 gatgaaacca agtagtgaca actatgtaca acgcgtatgc gactatacga aaaataattt 1261 tataaaagcc tatgaagaag cgaggcgagg gggtgaagag atagtaatgc ccgaagatat 1321 gtatacatcg attttacgtc ttgctaaaaa tacaagttcg ggtttctcaa ctagtattga 1381 tgtttttaaa cggtatggtc ccaacgcgaa gggtggacgt ggggaaaaga ttcaaataac 1441 gtcgcggatt aaagcgttag tcattttcac aaaaggccat gaaatattta cgccaaagaa 1501 cctagctttg aagtataata ctactgaatt ttttcaaacg aagggttcga gagatgtccc 1561 gattaaatcg acaagaatag tgtattctat caatctttca attctagttc cgcagcttat 1621 agtgacatta cccttgaacg agtatttcgc aagggcggga ggaagtactt tacctgaaac 1681 tcagcgtatg ggtgggaaga ttatcgttgg cgatctggag gctacaggat cgcgtgtgat 1741 ggatgctgct gatacattta ggaattcttc tgacccactt aacttaacca ttgcgattga 1801 ttatagcgag tttgatacgc atttaacacc ttataatttc aggaacggga tgctagacgg 1861 tatacgagag gcgatgcgca ggtatcaaca tctgagatat gagggttata cattagacga 1921 attaatagag tttggatatg gagagggtcg cgtaatgaat acattatgga atggaaaaag 1981 gcgagtgttt aaagtggcgt ttgaggatta cgttatgtta agtgatgagg ataaaactca 2041 gggaaccttc aaaccaccca ttggggtgaa gccggtaaaa aatattaaaa tttgtgaaga 2101 gctggagaaa aaggtggatg gccgtgattt gattttggtt tcgcctacag atggaagcga 2161 tctagcgctg attaacactc atttgtccgg ggagaactct acgttgattg cgaacagtct 2221 acataatctg gcgattggaa cagttattcg tgaggaggta aagcgcattt ttggcgatga 2281 tatttcattt aaatcagaac agtatgttgg tgacgacacc ttattttaca ctgaattgag 2341 aacgcggtca gttgagcggt tcgattcaat cgtagatacg atttttgaag ttattaagaa 2401 gagtggccac gaagcttcga tgtctaaaac tcttatagct cccttttcgg ttgaaaagac 2461 acaaacgcac gctaagcagg gaatatatgt cccacaggat cgaatgatgc tagtttcgtc 2521 cgaacgaaga aaagatatag aggatgttgc tgggtacctg agatctcaag ttcaaacgtt 2581 gacgacaaaa wttagtcgtg gtttctcgca tgagctggcg caaatcattt ttatgatgaa 2641 gtcgtcgatt attggacaca ggaaactaaa gaggacgatt aaagatggag gatatagaga 2701 taggaagtac gatgatgaca aagaggacgg cttcactctg ataatgttgc gagatccgct 2761 tattgctttt tatcccgttg aatggaatgg ctttggagcg cacccggcgg cgatgaatat 2821 aataatgact gaagatatgt tcgtagactc agtgatgaga ggggaatgta gagcgtggat 2881 ggaaccttta gttaagttga ttgatcagtc tcctcccctg tggaatgaaa cgagtgcgga 2941 taaaagaatg attggtacgg atagtacgat gtcttttttc tcaagaatgg caaggccagc 3001 ggtacggacg gtattaacca acactgaggt aggagatgcc gtaagaagct tgcctttggg 3061 agatttttct cctttcaaca tctctaagac tatgatgcat tcggcgttat tgaaggaaaa 3121 gaatgcccgt tcactactta ccccagcgta tgagatggag tatcaaaaag agttgcaagg 3181 ttggagacca aggcagaaga agttcttagt tacgtctaac gagatggaaa ttactacaaa 3241 ttatatgaag atgtttaacg ttggcaagat tccactacat ggtttgacgt tgaagctttt 3301 cccagatgtt aacttgtcga aagaattctt cttacaaaag agtgttttag ggaatagaga 3361 gagtccgaga gcgcgaatgt catacgttga tagaattgac tcaatactac gcggcgatgt 3421 cgtaatgcgg gggtttatca ctgcgaatac tattatcaat atattggaga aattagggca 3481 cacacattcg gcgagtgact taaccacgtt atttgagata atgaatttat catctagcgt 3541 cgctcagagg ctatcagaat atatcacgac tgaacgcgtt cgctttgacg ccatgaaact 3601 ctcaaagaga ggtatatgtg gtgatgaatt ctcaatgtca ttggatgttt gcacacaaac 3661 gatggtagat agatatatac gtgcgccgac gcagtttacc aagacggagc ttgatgccgt 3721 aaatttatat gttgctcaac atattatgct agatgcagcg actgggttga cgccatcacg 3781 atatgatatt aatgtgtctg gagacgaaag ggtacgattt aagcagcgtg ttgcccgatt 3841 taacacacac ttgcctaaga tgcggatggt caaaagattg attgaaacag aaaggttgtc 3901 cgcgagattg gttcagaacc agtttgtctg attagaacta gcacccctca gctcaaaaca 3961 cttac //