LOCUS       FJ196588                1748 bp    RNA     linear   VRL 21-MAY-2009
DEFINITION  African horsesickness virus isolate HS 02/07 non-structural
            protein NS1 gene, complete cds.
ACCESSION   FJ196588
VERSION     FJ196588.1
KEYWORDS    .
SOURCE      African horse sickness virus
  ORGANISM  African horse sickness virus
            Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Fasina,F., Potgieter,A.C., Ibironke,A., Bako,B., Bwala,D. and
            Kumbish,P.
  TITLE     First Report of an Outbreak of African Horsesickness Virus
            Serotype 2 in the Northern Hemisphere
  JOURNAL   J. Equine Vet. Sci. 28 (3), 167-170 (2008)
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Potgieter,A.C., Page,N.A., Liebenberg,J., Wright,I.M., Landt,O.
            and van Dijk,A.A.
  TITLE     Improved strategies for sequence-independent amplification and
            sequencing of viral double-stranded RNA genomes
  JOURNAL   J. Gen. Virol. 90 (PT 6), 1423-1432 (2009)
   PUBMED   19264638
REFERENCE   3  (bases 1 to 1748)
  AUTHORS   Potgieter,A.C., Fasina,F. and van der Sluis,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Virology, ARC-Onderstepoort Veterinary
            Institute, 100 Old Soutpan Road, Pretoria, Gauteng 0110, South
            Africa
COMMENT     GenBank Accession Numbers FJ196584-FJ196593 represent the complete
            genome of African horsesickness virus isolate HS 02/07.
FEATURES             Location/Qualifiers
     source          1..1748
                     /mol_type="genomic RNA"
                     /country="Nigeria"
                     /host="horse"
                     /db_xref="taxon:40050"
                     /isolate="HS 02/07"
                     /serotype="2"
                     /organism="African horse sickness virus"
     CDS             36..1682
                     /codon_start=1
                     /protein_id="ACI41994.1"
                     /translation="MDRFLTYFQVRGERANAVRLFGEISEQIDCSHLKRDCFVNGICA
                     RQHFKECCNIATDNGSRTNADKLVALALRALLDRQTIWTCVIKNADYVSQYADEQMEE
                     EVNKLYDVYLQSGTREEFEGFRQRNRPSRVVMDDSCSMLSYFYIPMNQGNPAPVAKLS
                     RWGQFGICYYDRTNVDGLIPYDEIGLAQAIDGLKDLIEGRLPVCPYTGANGRINAVLH
                     LPLEMEVIMAVQENATQLMRRAAQDFKFITHAGWKLYPRLLRQRFAIEDATEGVIHHV
                     MLGHLRYYDEDTSIVKYRFLNDGSLDWRTWTIPLHLMRTARLGHLQPESILVFMHKKL
                     TCQVCFMVDLAMLDTIPVVDSKNAELTGGTDVFYTRAYVHADNHKVPNVRDLMMNEVF
                     RKIDDHWVIQKCHTTKEAITVTAIQIQRSIRGDGQWDTPMFHQSMALLTRLIVYWLTD
                     VTERSAIFRLTCFAIFGCKPTARGRYIDWDDLGIFMKNVLDGRDLTVLEDETCFISMM
                     RMAMLHVQRSKVVCATVLEAPLEIQQVGQIVEVPFDFMHN"
                     /product="non-structural protein NS1"
ORIGIN      
        1 gttaaagaac ctaggcggtt tggcaacaca caaacatgga taggttcttg acttatttcc
       61 aggtacgagg agagagagca aacgctgttc ggctgtttgg agagatttcc gaacaaatag
      121 attgctcaca tctcaaacga gattgctttg taaatggaat atgtgcaaga caacacttta
      181 aagaatgctg taatattgct acagataatg gctcacgcac aaatgcagat aaattagtgg
      241 ctttagcttt gcgagcactt ttagatagac aaactatttg gacttgtgtc atcaaaaatg
      301 cggattacgt tagtcaatat gctgatgaac agatggaaga agaagttaat aagctatatg
      361 atgtctatct ccagagcggg acgagagagg aatttgaagg atttagacag aggaatagac
      421 caagtagagt tgtgatggat gatagctgct caatgctctc atatttttac attccaatga
      481 atcaagggaa tccagctcca gttgcgaagc ttagccgatg gggtcaattt ggaatttgtt
      541 actatgacag aacaaatgtt gatggattga ttccgtatga tgagatcggt ttagctcaag
      601 ctattgatgg cttaaaggat ctgattgaag gacgattgcc cgtttgccct tatactggag
      661 cgaatggcag aattaatgct gttttacatc taccattaga gatggaagtg attatggcgg
      721 tacaggaaaa tgcaacacaa ttaatgcgta gagcggcaca ggatttcaaa ttcatcacac
      781 acgctggatg gaagctatac ccaagattat tgcgacaacg gttcgcgatc gaggatgcaa
      841 cggaaggggt gattcatcat gtgatgctag gccatttaag atattatgat gaagacacaa
      901 gtatcgtgaa gtatcgcttc ctcaacgatg gatctttaga ttggaggact tggacaattc
      961 ctttacatct gatgcggaca gcgaggttgg gacatctgca accagaatcg attttagtct
     1021 tcatgcataa aaagcttaca tgtcaggtat gttttatggt tgaccttgct atgcttgaca
     1081 cgattccagt ggttgattca aaaaatgctg aactaacagg aggcacagat gtattttata
     1141 cacgtgcgta tgtacatgcg gacaatcaca aagtgccaaa tgtcagagat ttgatgatga
     1201 atgaagtctt caggaagatt gatgatcatt gggtgattca gaagtgtcat acaacgaagg
     1261 aagcgattac cgtaactgca attcaaatcc agaggtcgat cagaggtgat ggacagtggg
     1321 atactccgat gtttcaccaa tcaatggctc tgttaacacg attgatcgtt tactggttaa
     1381 cggatgtgac tgagagaagc gctatctttc ggctgacttg tttcgcaatc ttcggatgta
     1441 agccaacagc tcgaggtaga tatattgatt gggacgatct tggaatattc atgaagaatg
     1501 tattggatgg aagagatttg actgttttgg aagatgaaac atgttttatc tcgatgatga
     1561 ggatggcgat gttgcatgtg cagagatcca aggtagtgtg cgcaactgtg ttggaggcgc
     1621 cattggaaat acaacaggtt ggccagatcg ttgaagtacc ctttgatttc atgcataatt
     1681 agatcaaatt taaaagtttg tacccgggaa gtaggttaag atcatatccc cctggttcac
     1741 aaacttac
//