LOCUS NC_034833 6958 bp RNA linear VRL 30-MAY-2017 DEFINITION Agave tequilana leaf virus isolate agave azul-Mex1, complete genome. ACCESSION NC_034833 VERSION NC_034833.1 DBSOURCE BioProject accession PRJNA388402 KEYWORDS RefSeq. SOURCE Agave tequilana leaf virus ORGANISM Agave tequilana leaf virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus; unclassified Vitivirus. REFERENCE 1 (bases 1 to 6958) AUTHORS De La Torre Almaraz,R. and Salgado,H. TITLE Identification of Agave tequilana leaf virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 6958) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-MAY-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6958) AUTHORS De La Torre Almaraz,R. and Salgado,H. TITLE Direct Submission JOURNAL Submitted (16-NOV-2016) Laboratorio de Microbiologia, Ubipro Fes Iztacala Unam, Av de Los Barrios No 1 Tlalnepantla, Reyes Iztacala, Edo. de Mex 54090, Mexico COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KY190215. ##Assembly-Data-START## Assembly Method :: Trinity v. 2.3 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6958 /mol_type="genomic RNA" /country="Mexico" /collection_date="04-Mar-2016" /host="Agave tequilana" /db_xref="taxon:387423" /isolate="agave azul-Mex1" /organism="Agave tequilana leaf virus" gene 53..4672 /locus_tag="CCY42_gp1" /db_xref="GeneID:32928406" CDS 53..4672 /locus_tag="CCY42_gp1" /db_xref="GeneID:32928406" /codon_start=1 /protein_id="YP_009373228.1" /translation="MSLGASTSRVARANLYSSLGDKVESIKTVKAARLAVEEENADGR FDYYVSDEAYDFLSSRGIPLSLHCHRVHPHPISKMIENHILFNVFRNLARSRNTFVSL KESKLVSCKLNKSKFTSLDNVNNVYNRLIHAKDALRYQNPIREIDFSASRHLGPELVG SDIVFVHDEVHYWSLSDFQQFLTFCSTPVVYSIIYPAEIQLGYEISLNPTLYKFKLNK DGVSFTWYPDGAQSGAYVQPLNNWLLSTYKTIDGRSRSWTISKLESIGAHHVFLATPG SLVTEMEYTYADYTLLCPKKFRSATNRNPVIRAELARKTAHYLMALKKPDAASAVSKL RQLTKSDETPEEVMFLGNLANTVSKSKYFQTDGTFLLGKALARSFKRACGKWFTYLTD KEEFNRWSLESSLMALKTPELTISRVFRDYIIPPHQRPLKEIDEAIDLIFKGDKTSWV MRGDIIIPDREPQSYCTTEVVERRTRCVGTQVRKLEVYLRALLSYEVKEAFKSKTYYC EGVPLGLFHKSYVCVGKNLFRTTPLLQTKRPIDLYKEGLISLEEYEFRMLDLPPCPTS RVEPKQDQPGTPSTEENFSFGSVEPEEDADWLKGAETIMNLKNTCMIKPVVKAMGIGA DMVLSLCNSVEPNFTRYLSSKGLSICGFLRMVEILKLQVYMQRFDYEVSINGERSALG IKIEGEHATECPYKDVGFNVSNLLQMSQAYGTTKIKLNSAHARLLANSFCKNFTGVLL KEHKDVLAELEDFEKEVEVGCFFGFAGSGKSSYLCHTLRFMKEPCDIVVPRRALMEDW ANWIRGTPHKVYTFETYLVKGRKNPSHLIVDEVGLYPPGYFDLVQGLKRPGHIIMLGD PLQTTYYSKDDEVALAENGGCIFKRMVGDAIGIPYLLFSHRIPTKQKIFEMECTAPGE FEIEQVRSLNKNLCTLTFKRFSAEEYQGFTSVMTVGQAQGLSRDEVQIIIDEGSLHCD ENTVITAFTRARKKIKMFFTIEKDRVLQVAKSETLKRIIKGKRTTRENLLAHLRTQCP SKFLIIDGEEYIGANTMEEIEERLRGDPLLKSMLLILNAEEMEEEEAENEEAPEFSKT HLPLSERTNEQFASELTAKELREQYEKGVGYTDQINNNFESERYSSPYSRSSIYLHHK SDDDLTFLLSIRKRLRFADYERNKTLYLSQESSGKQIFDVLKRKLGFPEVAPTFSLSE KEMEFTQKRINKSAELLEAHSYRSDPDWPSNILKVFIKNQVCTKMEKRGVEAKAGQTI ACFSHAVLCKFGAQLRKTEEEFRSLLPDNILIFSQKNYDDLDEWCKTYFTDFRGTDSD YEAFDRSQDGMILAMEVELLNYFKWPTELIEEYKELKLMMGSSLGDLAVMRFSGEFGT FFFNTVCNMAYTYMRYEIPLEHPVAFAGDDMVAPGLLKVSSVYNEILRKMTLKAKVNY GDKPLFCGWRVSPLGIVKDPNLLLDRWGIAEEKGRLHECMCNYALEASYGYRLSDSLY ELNIDLDSYQELVRKIIKIKRKLPTHISSIFSSEQDVVSDGETTE" /product="RNA-dependent RNA polymerase" /note="RdRp" gene 4673..5128 /locus_tag="CCY42_gp2" /db_xref="GeneID:32928402" CDS 4673..5128 /locus_tag="CCY42_gp2" /db_xref="GeneID:32928402" /codon_start=1 /protein_id="YP_009373229.1" /translation="MYPSVAKRYSVNSLVQHHTDLIVYGISLEVGLEYLLRSEKFLAE TELIPDFIEWHHRTQKYRYFTVGVESEVTLKYNPNEVLSTIEFIEVKNSNLLSLVGFV GNTNLVHVNFSGGFIHSRRGRIRTNITLGSYMGLIKRIEGCVCYALADE" /product="hypothetical protein" gene 5129..5932 /locus_tag="CCY42_gp3" /db_xref="GeneID:32928403" CDS 5129..5932 /locus_tag="CCY42_gp3" /db_xref="GeneID:32928403" /codon_start=1 /protein_id="YP_009373230.1" /translation="MRMESKVEVFKVKDKRQGISDLKEFNKTIDKSKVYGQNVFSELF GEKRVYKSAICKDIEVRNGAVDTEIELYADETVKAVDEELYPFMHVGCIALGFMGLDR RMKGSFTVVVRDGRKKKGSDEICAFRFICKDKVAAFVDFPDFCVATADLKQGFTLKLS ITSEGLEFLDETHPLALNLVSICRFMDDTMETKMLVKKHGKHMYQELCETEILHPSIG KLQETKVEPQTDNDTMRAVQETIKILNGRKKDKSGHTDPAERQSSWGQI" /product="movement protein" gene 5862..6461 /locus_tag="CCY42_gp4" /db_xref="GeneID:32928404" CDS 5862..6461 /locus_tag="CCY42_gp4" /db_xref="GeneID:32928404" /codon_start=1 /protein_id="YP_009373231.1" /translation="MDGRKIKVAILTLLSAKVPGVKSEPSNDEERDSTNNILANIFGS IAIIGTSNKVSNFPSIIPNFDLSAGRLDDTKKKGEEIKLGEVIISMLTLSKAATEPPI SGLTLRQMCEPFATEAYLFLKAAAVSGVYTNLAKKMTRVGNKEPQVLFDFAKGLPLAK LTRSEASAIQVMHQRLFRTEGAKSVFEAQSNVGENSVEL" /product="coat protein" gene 6492..6872 /locus_tag="CCY42_gp5" /db_xref="GeneID:32928405" CDS 6492..6872 /locus_tag="CCY42_gp5" /db_xref="GeneID:32928405" /codon_start=1 /protein_id="YP_009373232.1" /translation="MNKSSNNPWLLGESRSAAKRRAKRWGVCFCHGRVECANKQTNSQ ADVRAALMEPATRWLSKTGTRYVTNAIQHCLDDMEARGDYSFHKNFKSGNEPNGGARS PEETPWAYNWNQCLEPVRDGKESP" /product="putative nucleic acid-binding protein" ORIGIN 1 catagttcca cgcgcttggt atcctaaaca aactcaattt aaaactctga gaatgtctct 61 aggagcatca acttcgcgcg tggcacgagc aaacctctac tcttcccttg gcgacaaggt 121 agagtcgata aagacagtga aggcagctag attagctgtg gaagaggaaa atgcagatgg 181 acgttttgac tactacgtct cagatgaggc gtacgacttc ttaagttcca gaggcatccc 241 gctttcttta cactgtcata gggtgcaccc acaccccata tctaagatga tagaaaacca 301 cattcttttt aatgtattcc gtaatttagc tagaagtagg aacacctttg ttagtctaaa 361 ggagagtaag ttagttagct gtaaattaaa taagagtaaa ttcactagct tagataatgt 421 aaataatgta tataatagat taattcacgc caaagatgct ctgagatacc aaaacccgat 481 cagagagatt gatttttcag catctaggca tttggggccg gaactcgttg ggtcagacat 541 tgtttttgtt catgacgagg tgcattattg gtcgttatct gatttccaac agtttcttac 601 cttctgctcc accccagttg tatacagcat catataccct gcagaaatac aactgggtta 661 tgagattagc ttgaacccca cactgtataa attcaagctg aacaaagatg gggtgagctt 721 tacatggtac ccagatgggg cccaatcagg tgcttacgta caaccactga acaactggtt 781 attaagcacc tacaaaacaa tagatgggag gtccagaagt tggactataa gcaaattgga 841 aagcatcggt gcccatcatg ttttcttagc cactccgggt agcctggtga cggagatgga 901 atacacttac gctgactaca ccctactctg cccgaaaaaa tttaggtcag caaccaacag 961 gaatccggta atcagggctg agcttgccag aaagaccgca cattatctaa tggcactcaa 1021 gaaaccggac gcagcctcag cagtcagcaa attgaggcag ttgaccaagt ccgacgagac 1081 accagaggaa gttatgtttc taggtaactt ggccaacact gttagcaaaa gcaaatactt 1141 ccaaacagat ggcaccttct tgctcgggaa ggccttggcc agatcattta aacgagcatg 1201 cgggaagtgg ttcacctatc tcacagacaa agaagaattc aataggtggt cactagaatc 1261 aagcctgatg gccctaaaga cccctgagct gactatatcc agggtcttta gggattacat 1321 catccccccc caccagaggc cattaaagga gatcgacgaa gctatagatc tgatcttcaa 1381 gggtgacaag acctcatggg tgatgagggg tgatataatc attcccgaca gggagccaca 1441 gagctactgc acaaccgagg tggtggagcg caggacaaga tgtgtgggca cacaggtgag 1501 gaaactggag gtttacctca gagcccttct gagttatgag gtcaaggaag cattcaaatc 1561 aaagacctat tactgtgagg gggtaccttt ggggctgttc cacaagagct atgtttgtgt 1621 gggcaagaac ctgttcagga ccaccccatt acttcaaaca aagcgcccca tagatctgta 1681 taaggaaggg ctcatcagtc tcgaggaata tgagttcagg atgctagacc taccgccatg 1741 ccctaccagc agggttgagc ccaaacagga ccaaccagga accccaagca ccgaagaaaa 1801 cttcagcttt ggttcagtcg aaccagagga agacgcagac tggctcaaag gggcagagac 1861 gatcatgaac ctcaaaaata catgcatgat caagccagtc gtcaaggcaa tgggaattgg 1921 cgcagatatg gtgttatccc tatgcaactc tgtggaacca aacttcacac gatacctgag 1981 ctcaaaaggg ttgagcattt gtgggttcct aagaatggta gaaatactca aactccaagt 2041 ctacatgcag cgattcgact atgaggtgag tattaatggg gagcgctctg ccttgggaat 2101 aaagattgag ggtgaacacg caactgaatg cccttacaaa gacgtggggt tcaacgtctc 2161 aaacctgcta cagatgagcc aggcttacgg cactaccaag atcaagctga actcggcgca 2221 cgctcgtctg ttggccaact ccttctgcaa aaatttcact ggggtactgc tgaaagagca 2281 caaagatgtg ctagctgagc tagaggactt cgagaaagaa gtggaggttg ggtgcttctt 2341 tgggtttgcg gggtcaggta agagctcata cttatgccac accctccggt tcatgaagga 2401 gccatgcgac atcgtagtgc caagaagggc acttatggag gactgggcaa actggatcag 2461 aggtacacca cacaaggtgt acactttcga aacctacctt gttaagggaa gaaagaaccc 2521 gagccatcta atagttgacg aggtaggatt gtacccacca gggtacttcg atctggttca 2581 ggggctgaag agaccaggtc acatcatcat gctaggggat cctctgcaaa caacatatta 2641 tagcaaggat gatgaggttg cattggcgga gaacgggggc tgtatattca agaggatggt 2701 aggagatgca atagggatac cctacctcct attttctcac cgcataccca caaaacagaa 2761 gatctttgag atggaatgca cagcgcccgg ggaattcgaa atcgaacagg tcaggtcctt 2821 aaataaaaat ctgtgcacct tgacgttcaa gagattcagc gcggaggagt accagggatt 2881 cacctctgta atgactgtgg ggcaagcaca agggctatcc agggatgagg tgcagatcat 2941 catagatgag ggatcactac actgcgatga aaacacagtg ataaccgcct tcacaagagc 3001 cagaaagaaa atcaaaatgt tcttcaccat agagaaggat agagtgctgc aggtggccaa 3061 aagcgaaaca ctcaagagga taatcaaagg taagagaact accagagaga acctcttggc 3121 tcacctacgc acccagtgcc cgtcgaagtt cctgattatt gatggtgaag aatacatagg 3181 ggctaacacg atggaggaaa tagaggagag gctacggggt gaccctctac tcaagagtat 3241 gctgttaatc ctaaatgctg aagaaatgga agaggaagaa gctgaaaatg aagaggcgcc 3301 cgagttctca aagacgcacc tacccctatc tgagcgcacc aatgagcagt tcgctagtga 3361 gctgactgct aaagagctgc gagagcagta cgagaaaggg gtagggtaca cagaccagat 3421 aaacaacaac tttgagagcg aaaggtacag cagtccatac tctagatcat ccatctatct 3481 gcatcacaag tctgatgatg atctcacatt tctcctgtcc ataaggaaac ggttgaggtt 3541 cgctgattac gaaagaaaca aaaccttata cctgagccaa gaaagcagcg ggaaacagat 3601 ctttgacgtg ctgaagagga agttgggttt ccctgaagtt gcaccaacct ttagcttgag 3661 cgaaaaggag atggagttca cacaaaaaag aataaacaag agcgccgagc tcctcgaggc 3721 ccactcatac agatccgacc cagattggcc aagcaacatc ctcaaggtct tcatcaagaa 3781 ccaagtgtgc accaagatgg agaaaagggg tgtggaggcc aaggctgggc agacgatagc 3841 ctgcttctca cacgccgtat tgtgcaaatt tggggcacag ctgcggaaaa cagaagagga 3901 gttcaggtcc ttgttgccag acaacatact catcttctct cagaaaaatt atgacgacct 3961 agatgaatgg tgcaaaactt actttacaga cttcagaggc accgattcag actacgaagc 4021 ttttgatagg tcacaagatg ggatgatact ggctatggag gttgaactgc tgaattactt 4081 taagtggccg actgaattga ttgaagaata caaggagcta aagctgatga tggggagctc 4141 attgggtgat ctggcagtta tgcggttctc cggagagttc gggacctttt tcttcaacac 4201 cgtgtgcaac atggcttaca catacatgcg gtacgaaata ccattggagc acccggtggc 4261 attcgctggt gatgacatgg tggccccagg tctcctgaag gtgtcaagtg tgtataatga 4321 gatactacgg aaaatgacac tcaaagcaaa ggtgaactat ggagacaagc ccctattctg 4381 cgggtggagg gtaagtccac ttgggattgt taaagaccca aatctgctgc tagacaggtg 4441 gggaattgcc gaggagaagg ggagactaca cgagtgcatg tgcaactacg cactagaggc 4501 gagttacggc tacaggttaa gtgattcact atacgagttg aacatcgact tagactccta 4561 ccaagaacta gtgcgaaaga tcataaaaat caagaggaag ctgcccacac acatcagctc 4621 aatcttctca tcagagcagg acgtggtctc tgacggggag acgacggagt gaatgtaccc 4681 ttcagtcgca aagaggtaca gtgtaaatag ccttgtacag catcatacgg atttgatagt 4741 atatggtatt agcttagaag taggtttaga gtacctgtta cgttccgaaa aatttttggc 4801 agaaacagaa ttgatcccag atttcattga gtggcaccac agaacccaga agtacagata 4861 cttcaccgtg ggggtcgaat cagaggtaac cctaaagtac aacccaaacg aggtcctttc 4921 aacgattgag ttcatcgaag tgaagaactc caacctgcta tcgctcgttg ggtttgtggg 4981 aaacacgaac ctggtacacg tcaacttctc agggggattc atccatagta ggcgaggaag 5041 gatacgcaca aacatcactt tgggctccta tatgggacta atcaagagga ttgaaggttg 5101 cgtttgctat gctctcgctg atgagtgaat gagaatggag tccaaagtgg aggtgttcaa 5161 ggtgaaggat aaacgacaag gcatatctga tctcaaggaa ttcaataaga caattgacaa 5221 atctaaggtc tatgggcaga atgtgttttc cgagctcttt ggcgaaaaga gggtgtacaa 5281 aagtgccatt tgcaaggaca tagaggtgag gaatggggct gttgacactg aaatcgaact 5341 atacgctgat gagacagtca aggccgttga tgaagagctc taccccttta tgcatgttgg 5401 atgcatcgct cttgggttca tgggattgga caggaggatg aaagggagct ttacagtggt 5461 tgtgcgagac ggtaggaaga agaaaggatc agacgagatc tgtgcgttca ggttcatttg 5521 caaagacaag gtcgcggcat ttgtggactt ccctgatttt tgtgtagcaa ctgctgatct 5581 caaacaaggc ttcaccctca aactaagcat cacatcagaa gggcttgagt ttcttgatga 5641 gacacaccca ctggccctga atttagtgtc catctgtcgg ttcatggatg atactatgga 5701 aaccaagatg ctggtcaaga agcatgggaa acacatgtac caagagctgt gcgaaactga 5761 aattctgcac ccaagcattg gtaagctgca agagacaaag gtggaacccc aaacagacaa 5821 tgacactatg cgggccgtgc aagaaacaat aaagatactc aatggacgga agaaagataa 5881 aagtggccat actgaccctg ctgagcgcca aagttcctgg ggtcaaatct gaacccagca 5941 atgacgagga acgtgacagt actaataata tattagctaa tatatttggt agtattgcaa 6001 taataggaac tagcaataaa gtctccaatt tcccaagcat cataccgaac tttgatctgt 6061 ctgccggacg ccttgatgat accaagaaga aaggggagga aatcaaatta ggagaggtga 6121 tcatctcgat gctaaccttg tccaaagcag cgactgaacc cccaattagc ggtttgactc 6181 ttcgtcaaat gtgtgaaccc ttcgccaccg aggcttacct tttcttgaag gcagccgcag 6241 tgtcaggggt ctatacaaat ctagccaaaa agatgaccag ggttgggaat aaggagcctc 6301 aagtcctctt tgacttcgcc aaaggtctac ctttagcaaa gttgactagg tcggaggcaa 6361 gtgcgatcca ggtcatgcat cagaggctat ttcgtactga aggagccaag agtgtatttg 6421 aagctcagtc aaatgttggg gaaaactcgg tggagctcta ggtctacgat acttaggtat 6481 aaatatacta tatgaataaa tcgtcaaata acccttggtt actaggtgag tccaggtcag 6541 ctgcgaagcg tagagccaag aggtggggtg tgtgtttctg tcatggtaga gtagagtgtg 6601 caaataagca aaccaattca caagcagatg ttagagcggc attaatggaa ccggcgacta 6661 gatggttatc gaaaaccggt actaggtacg tcacgaacgc catccaacac tgtcttgatg 6721 atatggaagc acggggtgat tattcattcc acaagaattt caagagcggt aacgaaccaa 6781 atgggggtgc aagaagtcca gaagagactc cttgggccta caattggaat caatgtctgg 6841 aaccggtgag agacgggaaa gagtcaccgt aaattcaagt tgctggaata cttagcctcc 6901 agcacttagt gttacaaggc gaaaagaaca ctcacgttaa taggacgtga aaaaaaaa //