LOCUS NC_004627 2734 bp ss-DNA circular VRL 08-DEC-2008 DEFINITION Ageratum yellow vein Taiwan virus, complete genome. ACCESSION NC_004627 VERSION NC_004627.1 DBSOURCE BioProject accession PRJNA14249 KEYWORDS RefSeq. SOURCE Ageratum yellow vein Taiwan virus ORGANISM Ageratum yellow vein Taiwan virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. REFERENCE 1 (bases 1 to 2734) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-MAR-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 2734) AUTHORS Shih,S.L. and Green,S.K. TITLE Direct Submission JOURNAL Submitted (21-SEP-2000) Virology unit, Asian Vegetable Research and Development Center, P. O. Box 42, Shanhua, Tainan, Taiwan, Republic of China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF307861. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2734 /mol_type="genomic DNA" /db_xref="taxon:222441" /country="Taiwan: Tainan" /organism="Ageratum yellow vein Taiwan virus" /host="Ageratum conyzoides" /note="isolated in December 1999" gene 134..484 /locus_tag="AYVTvgp1" /db_xref="GeneID:1482965" /gene="V2" CDS 134..484 /locus_tag="AYVTvgp1" /protein_id="NP_803547.1" /gene="V2" /db_xref="GeneID:1482965" /codon_start=1 /product="pre-coat protein" /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEQTYSPDTIGHDLIRD LISVIRARNYVEASRRYCHFHSRLEGTSPSELRHPRDEPCCCPHCPRHQQKKDMDQQA HVPQAQTVQNVQNP" gene 294..1067 /locus_tag="AYVTvgp2" /db_xref="GeneID:1482966" /gene="V1" CDS 294..1067 /locus_tag="AYVTvgp2" /protein_id="NP_803548.1" /gene="V1" /db_xref="GeneID:1482966" /codon_start=1 /product="coat protein" /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNRRRT WTNRPMYRKPRLYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGL THRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTAMDFGQVFNMY DNEPSTATIKNDLRDRYQVLRKFSSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAA KYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" gene complement(1064..1468) /locus_tag="AYVTvgp3" /db_xref="GeneID:1482967" /gene="C3" CDS complement(1064..1468) /locus_tag="AYVTvgp3" /protein_id="NP_803549.1" /gene="C3" /db_xref="GeneID:1482967" /codon_start=1 /product="C3 protein" /translation="MDFRTGELLTATQCESGVYTWTIKNPPYFKIIKHHERPFNTNHD IITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLNNLGVISI NNVIRACDHVLWDVLENTEYVTNSHIIKFNLY" gene complement(1209..1616) /locus_tag="AYVTvgp4" /db_xref="GeneID:1482968" /gene="C2" CDS complement(1209..1616) /locus_tag="AYVTvgp4" /protein_id="NP_803550.1" /gene="C2" /db_xref="GeneID:1482968" /codon_start=1 /product="C2 protein" /translation="MRNSSPSTTHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFG IDCANHGFSHRGITHCNSMREWRIYLDNQKSPIFQDNQAPREAIQHQPRHHNDQNTVQ SQPEESVGNTPVFSDLPDLDSLTTSDLAFLKSI" gene complement(1522..2604) /locus_tag="AYVTvgp5" /db_xref="GeneID:1482969" /gene="C1" CDS complement(1522..2604) /locus_tag="AYVTvgp5" /protein_id="NP_803551.1" /gene="C1" /note="rep protein" /db_xref="GeneID:1482969" /codon_start=1 /product="replication-associated protein" /translation="MPRSSSFQVKAKNIFLTYPKCPIPKEEALELIKNIQCPSDKLFI RVAQEKHSDGTLHLHALIQFKGKAQFRNSRHFDITHPNTSTQFHPNFQGAKSSSDVKS YIEKDGDYVDWGVFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPKEYIF QFHNLNTNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPKSIV IEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFV TLNNPLYSGTNQSAAQNSEEEASSQA" gene complement(2190..2447) /locus_tag="AYVTvgp6" /db_xref="GeneID:1482970" /gene="C4" CDS complement(2190..2447) /locus_tag="AYVTvgp6" /protein_id="NP_803552.1" /gene="C4" /db_xref="GeneID:1482970" /codon_start=1 /product="C4 protein" /translation="MGLCISTRSYNSKVKPNSGIVDTSTLHTPTPPHNSIQTSRELSP VPMSSPTSRRTVITSTGVYFRSTEDLLEEVNRRLTMQLQKR" ORIGIN 1 accggatggc cgcgattttt tttttaaagt ggtccctacc actaacaaaa atcccccact 61 cagaacgctc cctcaaagtt aaattattaa gtggtcccct atttatactt attctccaag 121 tattatttta aacatgtggg atcctctttt gaacgagttt cctgaaactg ttcacggttt 181 taggtgtatg cttgccgtaa aatatcttca attagttgaa cagacatact ctcctgatac 241 gattggtcac gatcttatac gcgatttaat ttcagtaatt cgtgctcgca attatgtcga 301 agcgtcccgc agatattgtc atttccactc ccgcctcgaa ggtacgtcgc cgtctgaact 361 tcgacacccc cgtgatgagc cgtgctgctg cccccactgt cctcgtcacc aacagaagaa 421 ggacatggac caacaggccc atgtaccgca agcccagact gtacagaatg tacagaaccc 481 ctgatgtgcc caaaggttgt gaaggtccat gtaaggtaca atcgtatgaa cagaggcacg 541 acatatccca tgttggtaag gtattatgtg ttagtgatgt cacccgtggt aatgggctta 601 cacatcgtgt tggtaagaga ttctgtgtga agtctgttta tgtattaggt aaaatatgga 661 tggatgaaaa tattaaaact aagaaccata cgaacactgt gatgtttttt cttgttcgtg 721 acagaaggcc ctatggtact gctatggatt ttggtcaggt gtttaacatg tatgataatg 781 agcccagtac tgctactatc aagaatgatc ttcgagatcg ttatcaagtt ttaaggaaat 841 tcagttcaac agtcacaggg ggtcaatatg cttctaagga acaggcgttg gtgaagaaat 901 ttatgaagat taataattat gtagtttata atcatcaaga agctgctaag tatgacaatc 961 atactgaaaa tgccttgtta ttgtatatgg cttgtactca tgccagtaat ccagtgtatg 1021 ctactttgaa gatcagaatc tatttctatg attctgttca gaattaataa agattgaatt 1081 ttattatatg agaatttgtt acatattctg tattttccaa tacatcccat aatacatgat 1141 cacatgctct aattacattg ttaatactaa ttacacccaa attatttaaa tatttcatac 1201 attgaaccct aaatactctt aagaaacgcc aagtctgagg ttgtaagcga gtccagatct 1261 ggaagatcag aaaacactgg tgtattccca acgctttcct caggttgtga ttgaactgta 1321 ttctgatcgt tatgatgtcg tggttggtgt tgaatggcct ctcgtggtgc ttgattatct 1381 tgaaatatgg gggatttttg attgtccagg tatatacgcc actctcgcat tgagttgcag 1441 tgagtaattc ccctgtgcga aaatccatga tttgcacaat ctatgccgaa gtagtatgaa 1501 cacccgcacg ttagatcaac tctacgcctg cgaactggcc tcctcttcgc tattctgtgc 1561 tgcactttga ttggtacctg agtacaatgg gttgttgagg gtgacgaatt ccgcattctt 1621 tatagcccac tcttttaatg ctgaattctt ttcttcgtcc aagtactctt tgtatgatga 1681 tgttggtcct ggattgcaaa ggaagatagt tgggattcca cctttaattt gaattggttt 1741 cccgtacttg gtgttgcttt gccagtccct ttgggccccc atgaattctt taaagtgctt 1801 tagatagtgg gggtctacgt catcaatgac gttataccaa gcatcattac tgtacacctt 1861 tggactcaga tctagatgac cgcacagata attatgtggt cccagtgatc tggcccacat 1921 tgttttacca gtacgactct ctccctctat gacaatactt ttgggtctcc aaggccgcgc 1981 agcggcacca ctcacatttt cagaaaccca ctcctcaagt tcttctggaa cttgatcaaa 2041 tgaagaagat aaaaaaggac aaacaaatac ctctaaagga ggtgcaaaaa tcctatctaa 2101 attagtattt aaattatgaa attgaaaaat atattctttt ggaagttttt ccctaattat 2161 tgccattgct gcctctttcg aacctgcgtt taacgcttct gcagctgcat cgttagccgt 2221 ctgttgacct cctctagcag atcttccgtc gatctgaaat acaccccagt cgacgtaatc 2281 accgtccttc tcgatgtagg acttgacatc ggaactggac ttagctccct ggaagtttgg 2341 atggaattgt gtggaggtgt tggggtgtgt aatgtcgaag tgtcgactat tcctgaattg 2401 ggctttacct ttgaattgta tgagcgcgtg gagatgcaga gtcccatctg agtgtttttc 2461 ttgtgcaact ctgataaata atttatcaga agggcactgt atatttttaa taagctctaa 2521 ggcttcttct ttgggaattg ggcatttcgg ataagtgagg aagatatttt tggcttttac 2581 ttgaaatgaa cttgaacgag gcattttgac taagtcaatt gggtgctctc aaacttctct 2641 ggaatggggt gctttgggtg cttatttata cggagccccc aaaagaaatt caaactttaa 2701 tttgaaatcc acaagcggcc atccgtataa tatt //