LOCUS NC_004626 2741 bp DNA linear VRL 05-FEB-2011 DEFINITION Ageratum yellow vein virus, complete genome. ACCESSION NC_004626 VERSION NC_004626.1 DBSOURCE BioProject accession PRJNA15203 KEYWORDS RefSeq; c1 gene; C2 gene; c3 gene; C4 gene; C5 gene; V1 gene; V2; gene. SOURCE Ageratum yellow vein virus ORGANISM Ageratum yellow vein virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 AUTHORS Tan,P.H., Wong,S.M., Wu,M., Bedford,I.D., Saunders,K. and Stanley,J. TITLE Genome organization of ageratum yellow vein virus, a monopartite whitefly-transmitted geminivirus isolated from a common weed JOURNAL J. Gen. Virol. 76 (PT 12), 2915-2922 (1995) PUBMED 8847495 REFERENCE 2 (bases 1 to 2741) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-MAR-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2741) AUTHORS Stanley,J. TITLE Direct Submission JOURNAL Submitted (27-MAY-1997) J.Stanley, Department of Virus Research/John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, U.K REFERENCE 4 AUTHORS Tan,H.N.P. TITLE Direct Submission JOURNAL Submitted (13-SEP-1993) H.N.P. Tan, National University of Singapore, Dept of Botany, Lower Kent Ridge Road, Singapore 0511, SINGAPORE REMARK revised by [3] COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to X74516. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2741 /mol_type="genomic DNA" /db_xref="taxon:44560" /clone="pHN419" /organism="Ageratum yellow vein virus" gene 131..481 /locus_tag="AYVVgp1" /db_xref="GeneID:1403802" /gene="V1" CDS 131..481 /locus_tag="AYVVgp1" /protein_id="NP_803538.1" /gene="V1" /db_xref="InterPro:IPR002511" /db_xref="InterPro:IPR005159" /db_xref="UniProtKB/TrEMBL:Q65315" /db_xref="GeneID:1403802" /codon_start=1 /product="hypothetical protein" /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEQTYSPDTIGHDLIRD LISVIRARNYVEASRRYCHFHSRLEGTSPSELRHPRDEPCCCPHCPRHQQKKDMDQQA HVPQAQTVQNVQNP" gene complement(252..548) /locus_tag="AYVVgp2" /db_xref="GeneID:1403801" /gene="C5" CDS complement(252..548) /locus_tag="AYVVgp2" /protein_id="NP_803539.1" /gene="C5" /db_xref="InterPro:IPR013671" /db_xref="UniProtKB/TrEMBL:Q65318" /db_xref="GeneID:1403801" /codon_start=1 /product="hypothetical protein" /translation="MGYVVPLFIRLDLTWAFTTFGHIRGSVHSVQSGLAVHGPVGPCP SSVGDEDSGGSSTAHHGGVEVQTATYLRGGSGNDNICGTLRHNCEHELLKLNRV" gene 291..1064 /locus_tag="AYVVgp3" /db_xref="GeneID:1403803" /gene="V2" CDS 291..1064 /locus_tag="AYVVgp3" /protein_id="NP_803540.1" /gene="V2" /db_xref="GOA:Q65316" /db_xref="InterPro:IPR000263" /db_xref="InterPro:IPR000650" /db_xref="UniProtKB/TrEMBL:Q65316" /db_xref="GeneID:1403803" /codon_start=1 /product="hypothetical protein" /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNRRRT WTNRPMYRKPRLYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGL THRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMY DNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAA KYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" gene complement(1061..1465) /locus_tag="AYVVgp4" /db_xref="GeneID:1403799" /gene="C3" CDS complement(1061..1465) /locus_tag="AYVVgp4" /protein_id="NP_803541.1" /gene="C3" /db_xref="InterPro:IPR000657" /db_xref="UniProtKB/TrEMBL:Q65319" /db_xref="GeneID:1403799" /codon_start=1 /product="hypothetical protein" /translation="MDFRTGELLTATQCENGVYTWTIKNPLYFKIIKHHERPFNTNND IITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLNNLGVISI NNVIRACDHVLWDVLENTEYVTNSHIIKFNLY" gene complement(1206..1613) /locus_tag="AYVVgp5" /db_xref="GeneID:1403798" /gene="C2" CDS complement(1206..1613) /locus_tag="AYVVgp5" /protein_id="NP_803542.1" /gene="C2" /db_xref="GOA:Q65320" /db_xref="InterPro:IPR000942" /db_xref="UniProtKB/TrEMBL:Q65320" /db_xref="GeneID:1403798" /codon_start=1 /product="hypothetical protein" /translation="MRNSSPSRGHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFG IDCANHGFSHRGITHCNSMREWRIYLDNQKSPIFQDNQAPREAIQHQQRHHNDQNTVQ SQPEESVGNTPVFSDLPDLDSLTTSDLAFLKSI" gene complement(1519..2601) /locus_tag="AYVVgp6" /db_xref="GeneID:1403797" /gene="C1" CDS complement(1519..2601) /locus_tag="AYVVgp6" /protein_id="NP_803543.1" /gene="C1" /db_xref="GOA:Q65317" /db_xref="HSSP:1L5I" /db_xref="InterPro:IPR001191" /db_xref="InterPro:IPR001301" /db_xref="InterPro:IPR022690" /db_xref="InterPro:IPR022692" /db_xref="UniProtKB/TrEMBL:Q65317" /db_xref="GeneID:1403797" /codon_start=1 /product="hypothetical protein" /translation="MAPPKRFQINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYI KICRELHEDGSPHLHVLMQFEGKYKCQNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKS YIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDYVL QFHNLNANLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPISIV IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFV TLERPLYSGTNQSAAQNSEEEASSQA" gene complement(2154..2450) /locus_tag="AYVVgp7" /db_xref="GeneID:1403800" /gene="C4" CDS complement(2154..2450) /locus_tag="AYVVgp7" /protein_id="NP_803544.1" /gene="C4" /db_xref="InterPro:IPR002488" /db_xref="UniProtKB/TrEMBL:Q65321" /db_xref="GeneID:1403800" /codon_start=1 /product="hypothetical protein" /translation="MKMGALISTCLCSSKGNTNARITDSSTWYPLPGQHISIRTFREL NPAPTSSPISTRTETPSNGVSFRSMDDLQEEDNRQPMTLTPRHLTAAVSQRLLM" ORIGIN 1 accggatggc cgcgattttt ttaaagtggt ccccaccact aacaaaaatc ccccactcac 61 aacgctccct caaagttaaa ttattacgtg gtcccctatt tatacgtagt ctccaagtat 121 tattttaaac atgtgggatc ctcttttgaa cgagtttcct gaaactgttc acggttttag 181 gtgtatgctt gccgtaaaat atcttcaatt agttgaacag acttactctc ctgatacgat 241 tgggcacgat cttatacgcg atttaatttc agtaattcgt gctcgcaatt atgtcgaagc 301 gtcccgcaga tattgtcatt tccactcccg cctcgaaggt acgtcgccgt ctgaacttcg 361 acacccccgt gatgagccgt gctgctgccc ccactgtcct cgtcaccaac agaagaagga 421 catggaccaa caggcccatg taccgcaagc ccagactgta cagaatgtac agaacccctg 481 atgtgcccaa aggttgtgaa ggcccatgta aggtccaatc ttatgaacag aggcacgaca 541 tatcccatgt aggtaaagta ttatgtgtta gtgatgtcac gcgtggtaat gggcttacac 601 atcgtgttgg taagagattc tgtgttaagt ccgtttatgt attgggtaaa atatggatgg 661 atgaaaatat caaaactaag aaccatacga acactgtgat gttttatctt gttcgtgaca 721 gaaggccctt tggtactgct atggattttg gtcaggtgtt taacatgtat gataatgagc 781 ctagtactgc tactatcaag aatgatcttc gagatcgtta tcaagtttta aggaaattca 841 cttcaacagt cacaggtggt caatatgctt ctaaggaaca ggcgttggtt aagaaattta 901 tgaagattaa taattatgta gtttataatc atcaagaagc tgctaagtat gacaatcata 961 ctgagaatgc cttgttattg tatatggctt gtactcatgc cagtaatcca gtgtatgcta 1021 ctttgaagat cagaatctat ttctatgatt ctgttcagaa ttaataaaga ttgaatttta 1081 ttatatgaga atttgttaca tattctgtat tttccaatac atcccataat acatgatcac 1141 atgctctaat tacattgtta atactaatta cacccaaatt atttaaatat ttcatacatt 1201 gaaccctaaa tactcttaag aaacgccaag tctgaggttg taagcgagtc cagatctgga 1261 agatcagaaa acactggtgt attcccaacg ctttcctcag gttgtgattg aactgtattc 1321 tgatcgttat gatgtcgttg ttggtgttga atggcctctc gtggtgcttg attatcttga 1381 aatatagggg atttttgatt gtccaggtat atacgccatt ctcgcattga gttgcagtga 1441 gtaattcccc tgtgcgaaaa tccatgattt gcacaatcta tgccgaagta gtatgaacac 1501 ccgcacgtta gatcaactct acgcctgcga actggcctcc tcttcgctat tctgtgctgc 1561 actttgattg gtacctgagt acaatggcct ctcgagggtg acgaattccg cattctttat 1621 agcccactct tttaatgctg aattcttttc ttcgtccaag tactctttat atgatgatgt 1681 tggccctgga ttgcaaagga agatagttgg gattccacct ttaatttgaa ttggtttccc 1741 gtatttagtg ttgctttgcc agtccctttg ggcccccatg aattctttaa agtgctttag 1801 atagtggggg tctacgtcat caatgacgtt ataccaagca tcattactgt atacttttgg 1861 actcagatct agatgaccgc acaaataatt atgtggtccc agtgacctgg cccacattgt 1921 tttaccagta cgactatcac cttctatcac aatactgatg ggtctccatg gccgcgcagc 1981 ggcaccactc acattttcag aaacccactc ttcaagttct tccgggactt gatcaaatga 2041 agaagataaa aaaggacaaa caaaaacctc taaaggaggt gcaaaaatcc tatctaaatt 2101 agcatttaaa ttatgaaatt gtaaaacata atctttagga gctaactcct taattacatt 2161 aagagcctct gacttactgc cgctgttaag tgcctgggcg taagcgtcat tggctgtctg 2221 ttgtcctcct cttgcagatc gtccatcgat ctgaaactca ccccattcga gggtgtctcc 2281 gtccttgtcg atataggact tgacgtcgga gctggattta gctccctgaa tgttcggatg 2341 gaaatgtgct gacctggaag gggataccaa gtcgaagaat ctgttattct ggcatttgta 2401 tttcccttcg aactgcataa gcacgtggag atgagggctc ccatcttcat gaagctctct 2461 gcagattttg atatattttt tgttggttgg ggtgtttagg ttttgtaatt gggaaagtgc 2521 ctcttcttta gtaagagagc attgtggata agtgaggaag taattctttg catttatttg 2581 gaaacgtttt ggaggtgcca tgttgaccag tcaatcggta ctcaacaaac ttctctattc 2641 aattggggaa tggtactcaa tttataggtg agtaccgaat ggcactttgg taattcccaa 2701 aaggaattcg aaattcaaat cgcggccatc cgtataatat t //