LOCUS       JN809818                2750 bp    DNA     circular VRL 15-JAN-2012
DEFINITION  Ageratum yellow vein virus isolate AFSP5d segment A, complete
            sequence.
ACCESSION   JN809818
VERSION     JN809818.1
KEYWORDS    .
SOURCE      Ageratum yellow vein virus
  ORGANISM  Ageratum yellow vein virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Shih,S.L., Tsai,W.S., Lee,L.M. and Kenyon,L.
  TITLE     First report and molecular characterization of begomoviruses
            infecting Sauropus androgynus in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Shih,S.L., Tsai,W.S., Lee,L.M. and Kenyon,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2011) Virology, AVRDC-The World Vegetable
            Center, PO Box 42, Shanhua, Republic of China
FEATURES             Location/Qualifiers
     source          1..2750
                     /mol_type="genomic DNA"
                     /country="Thailand: Kamphaengsaen"
                     /segment="A"
                     /collection_date="2010"
                     /host="Sauropus androgynus"
                     /db_xref="taxon:44560"
                     /isolate="AFSP5d"
                     /organism="Ageratum yellow vein virus"
     gene            135..485
                     /gene="V2"
     CDS             135..485
                     /codon_start=1
                     /protein_id="AEX37943.1"
                     /gene="V2"
                     /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRD
                     LISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQA
                     HVSQAQILQSVQKP"
                     /product="pre-coat protein"
     gene            295..1068
                     /gene="V1"
     CDS             295..1068
                     /codon_start=1
                     /protein_id="AEX37940.1"
                     /gene="V1"
                     /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRI
                     WTNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGL
                     THRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMY
                     DNEPSTATIKNDLRDRYQVLRKFTATVTGGQYASKEHALVRKFMKINNYVVYNHQEAA
                     KYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
                     /product="coat protein"
     gene            complement(1065..1469)
                     /gene="C3"
     CDS             complement(1065..1469)
                     /codon_start=1
                     /protein_id="AEX37942.1"
                     /gene="C3"
                     /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHD
                     IITIQIQFNHNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISI
                     NNVIRACDHVLWDVLEKTEYVTQSNIIKFNLY"
                     /product="replication enhancement protein"
     gene            complement(1210..1617)
                     /gene="C2"
     CDS             complement(1210..1617)
                     /codon_start=1
                     /protein_id="AEX37941.1"
                     /gene="C2"
                     /translation="MQNSSPSTAHYTQVPIKVQHRIAKRRPIRRRRVDLTCGCSYYFG
                     IDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQ
                     PQPEESVGNTPVFSELPDLDSLTTSDLAFLKSI"
                     /product="transcriptional activation protein"
     gene            complement(1517..2605)
                     /gene="C1"
     CDS             complement(1517..2605)
                     /codon_start=1
                     /protein_id="AEX37939.1"
                     /gene="C1"
                     /translation="MAPPRPFKINAKNYFLTYPQCSLTKEEALSQLKNLETPTNKKFI
                     KICRELHEDGSPHLHVLIQFEGKFQCKNNRFFDIVSPTRSAHFHPNIQGAKSSSDVKS
                     YIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAKALNSGSKSEALNVIRELAPKDFVL
                     QFHNLNSNLDRIFTPPLEVYVSPFSSSSFDQVPEELECWVSENVRDAAARPWRPISIV
                     IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG
                     AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFI
                     TLNSPLYSGTNQSATQNSQEEANSQAES"
                     /product="replication-associated protein"
     gene            complement(2158..2448)
                     /gene="C4"
     CDS             complement(2158..2448)
                     /codon_start=1
                     /protein_id="AEX37944.1"
                     /gene="C4"
                     /translation="MGLLISTCLSSSKGNSSARITDSSTLYPQPGQHISIRTFRELNP
                     APTSSPISTRMEILSNGVNSRSTDDLHEGDNRQPMTLTPRRLTAAVSQRLLM"
                     /product="C4 protein"
ORIGIN      
        1 accggatggc cgcgattttt tttaaagtgg tccccaccac taacaaatgt cccccactaa
       61 aaacgctctc tcaaagctta attgttttgt ggtcccttat ttaaacttgc tcagcaagta
      121 gttcactccg cactatgtgg gatccattag taaacgagtt tcccgaaact gttcacggtc
      181 ttaggtgtat gcttgccgta aaatattgtc agttaattga acagacatac gctccagata
      241 cggttggtta cgatcttata cgagatttaa tttcagtaat tcgtgctcgc aattatgtcg
      301 aagcgtcccg ccgatatagt catttcaact cccgcctcga aggtacgacg tcgtctgaac
      361 ttcgacaccc ccgtgatgag ccgtgctgct gcccccactg tcctcgtcac caacaaaaaa
      421 aggatatgga ccaacaggcc catgtatcgc aagcccagat tctacagagt gtacaaaagc
      481 cctgatgtgc ccaaaggttg tgaaggtcca tgtaaggtcc aatcgtatga acagaggcac
      541 gacatatccc atgttggtaa agtattatgt gttagtgatg tcactcgtgg tagtgggctt
      601 acccatcgtg ttggtaagag attctgtgtg aagtccgttt atgtattggg taagatatgg
      661 atggatgaaa atatcaaaac caagaaccat acgaacactg tgatttttta tcttgttcgt
      721 gatagaaggc cctatggttc tgctatggat tttggtcagg tgtttaacat gtatgataat
      781 gagcccagta ctgctactat caagaatgat cttcgagatc gttatcaagt gttaaggaaa
      841 ttcactgcaa cagttacagg tggtcaatat gcttctaagg agcacgcgtt ggttaggaaa
      901 tttatgaaga ttaataatta tgtagtttat aatcatcaag aggctgctaa gtatgacaat
      961 catactgaga atgccttgtt attgtatatg gcttgtactc atgccagtaa tccagtgtat
     1021 gctactttga agatcagaat ctatttttat gattctgttc agaattaata aagattgaat
     1081 tttattatat tagattgtgt tacatattct gttttttcca atacatccca taatacatga
     1141 tcacatgctc taattacatt gttaatacta attacaccca tattatctaa atatttcata
     1201 cattgaaccc taaatactct taagaaacgc caagtctgag gttgtaagcg agtccagatc
     1261 tggaagttca gaaaacactg gtgtattccc aacgctttcc tcaggttgtg gttgaactgt
     1321 atttggatcg ttatgatgtc gtggttggtg ttgaatggtc tctcgtggtg cttggttatc
     1381 ttgaaatata ggggattttt gatcgtccag atatacacgc cactctcgca ttgagttgca
     1441 gtgagtaatt cccctgtgcg agaatccatg attggcgcag tctatgccga agtagtatga
     1501 gcagccgcac gttagatcaa ctctccgcct gcgaattggc ctcctcttgg ctattctgtg
     1561 ttgcactttg attggtacct gagtataatg ggctgttgag ggtgatgaat tctgcattct
     1621 ttaatgccca atcttttaat gccgaattct tatcctcatt caagtactct ttatatgatg
     1681 acgttgggcc tggattgcag aggaagatag tgggaattcc gcctttaatt tgaattggct
     1741 tcccgtactt tgtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct
     1801 ttagatagtg gggatctacg tcatcaatga cgttgtacca ggcatcatta ctgtacacct
     1861 ttggactcag gtctagatga ccacacagat aattatgtgg acccaatgac ctggcccaca
     1921 ttgttttccc tgtacgacta tctccctcaa taacaatact tatcggtctc catggccgcg
     1981 cagcggcatc ccttacattc tcggacaccc aacactcaag ttcttccgga acttgatcaa
     2041 aagaagaaga agaaaaagga gaaacataaa cctctaaagg aggtgtaaaa atcctatcta
     2101 aattactatt taaattatga aattgtaaaa caaaatcctt aggggctaat tccctaatta
     2161 cattaagagc ctctgactta ctgccgctgt taagcgcctt ggcgtaagcg tcattggctg
     2221 tctgttgtcc ccctcgtgca gatcgtccgt cgatctggaa ttcaccccat tcgagagtat
     2281 ctccatcctt gtcgatatag gacttgacgt cggagctgga tttagctccc tgaatgttcg
     2341 gatggaaatg tgctgacctg gttggggata caatgtcgaa gaatctgtta ttcttgcact
     2401 ggaatttccc ttcgaactgg ataagcacgt ggagatgagg agacccatct tcgtgaagct
     2461 ctcggcagat tttaatgaat tttttattgg ttggggtttc taggtttttt aattgggaaa
     2521 gtgcttcctc tttggtgaga gagcactgtg ggtatgtgag gaagtaattt ttggcattta
     2581 ttttaaatgg tcttggagga gccattgact tggtcaatcg gtgtctctac taattctcta
     2641 gcaatcggtg tattggagtc ctatatatag ttggacacca aatggcaatt attgtaattt
     2701 tgaaaagaaa ttcgaattca aattccaaaa gcggccatcc gtataatatt
//